Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte1b21
         (768 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces p...    28   1.3  
SPCC1281.08 |wtf11|meu24|wtf element Wtf11|Schizosaccharomyces p...    28   1.7  
SPAC4A8.09c |cwf21||complexed with Cdc5 protein Cwf21 |Schizosac...    26   6.8  
SPCC31H12.06 |mug111||sequence orphan|Schizosaccharomyces pombe|...    26   6.8  
SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|ch...    25   9.0  
SPBC3H7.02 |||sulfate transporter |Schizosaccharomyces pombe|chr...    25   9.0  
SPCC895.08c |||conserved fungal protein|Schizosaccharomyces pomb...    25   9.0  
SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces po...    25   9.0  

>SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 275

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 18/55 (32%), Positives = 27/55 (49%)
 Frame = +3

Query: 525 SPSSGGYLHRASSRDENDSHRAPSERTLSEYTTMDERTRSPSGNDHRNGRRHQQT 689
           SPS      R+   DE    R+ S R  S   + D R+RSP   D R+ +R+ ++
Sbjct: 117 SPSPHEARSRSPYNDERSDRRSMSPRYRSRSRSPDGRSRSPD-YDRRSPKRNHRS 170


>SPCC1281.08 |wtf11|meu24|wtf element Wtf11|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 264

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 14/49 (28%), Positives = 25/49 (51%)
 Frame = -1

Query: 486 SLICAPFLFVFFFSQLNHVNVTYIFKNGSFEFACPSFSLFFFLIQWYIF 340
           S++C   L +F   Q N V++  +       + C S +L F L+++Y F
Sbjct: 116 SIVCIFDLVIFGCLQYNMVSMDDLHVMQRLSWFCASLALLFILMRYYDF 164


>SPAC4A8.09c |cwf21||complexed with Cdc5 protein Cwf21
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 293

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 19/51 (37%), Positives = 24/51 (47%)
 Frame = +3

Query: 489 NHYVATHRSGVDSPSSGGYLHRASSRDENDSHRAPSERTLSEYTTMDERTR 641
           ++Y    R   DS SS   L R  S +E+ S R  SE    +Y   DER R
Sbjct: 209 DNYNENRRRHYDSYSSYDELERRRSSNESYSRR--SELPRRDYNRHDERER 257


>SPCC31H12.06 |mug111||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 468

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 12/58 (20%), Positives = 30/58 (51%)
 Frame = -3

Query: 484 FNLCAIFVCLFFFSIKSRQCDVHFQKWVVRICLSVIFSFFFSNSMVYFFI*PTSVKMF 311
           F +  + +C F +S+ +   D+H Q  ++ + +S++   F ++   +  +   SV +F
Sbjct: 284 FPIPIVLLCFFLYSLLTPFFDIHLQFQLIVMHMSIVQVGFINSVKTFGSLLTCSVCLF 341


>SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 243

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +3

Query: 513 SGVDSPSSGGYLHRASSRDENDSHRAPS 596
           SG  +  S  + HR+SSRD   S+R+ S
Sbjct: 60  SGRSASRSSNFSHRSSSRDSFSSNRSYS 87


>SPBC3H7.02 |||sulfate transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 877

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = +1

Query: 85  NYCLSAVLVH*VVQLIIKW 141
           N  LSAV++H V  LII W
Sbjct: 486 NAVLSAVIIHSVFDLIIPW 504


>SPCC895.08c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 490

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 14/45 (31%), Positives = 19/45 (42%)
 Frame = +3

Query: 474 HKLKNNHYVATHRSGVDSPSSGGYLHRASSRDENDSHRAPSERTL 608
           HK K+N   +  R    S S  G  H  +      S  +PSE +L
Sbjct: 362 HKAKSNSLFSMKRPSSSSSSLSGSWHGDTENSVKQSLASPSEASL 406


>SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 665

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 16/86 (18%), Positives = 33/86 (38%)
 Frame = +3

Query: 447 KKKRQTKMAHKLKNNHYVATHRSGVDSPSSGGYLHRASSRDENDSHRAPSERTLSEYTTM 626
           K    T+  H        + H + +++ ++        S+ ++ +H APS+    E  + 
Sbjct: 416 KHAGSTQEWHSHTTPRSTSKHENNLNNITNSAKNEHIRSQRQHKTHAAPSKELTKESLSN 475

Query: 627 DERTRSPSGNDHRNGRRHQQTNGSPR 704
           D+ +       H+      Q   SPR
Sbjct: 476 DQLSVKEKRRHHKKAPTLIQNLNSPR 501


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,065,976
Number of Sequences: 5004
Number of extensions: 65526
Number of successful extensions: 210
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 197
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 210
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 369323696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)