Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte1b21
(768 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U64842-1|AAB37083.2| 710|Caenorhabditis elegans Hypothetical pr... 41 0.001
Z50874-10|CAA90770.1| 302|Caenorhabditis elegans Hypothetical p... 36 0.024
U58749-5|AAU05597.1| 1551|Caenorhabditis elegans Hypothetical pr... 34 0.097
U58749-4|AAU05598.1| 1592|Caenorhabditis elegans Hypothetical pr... 34 0.097
AF408761-1|AAO27840.1| 741|Caenorhabditis elegans Rap1GAP protein. 33 0.30
AF016660-1|AAK71368.1| 742|Caenorhabditis elegans Hypothetical ... 33 0.30
Z99267-1|CAB16465.1| 732|Caenorhabditis elegans C33A12.12 protein. 31 0.68
Z68493-14|CAA92801.1| 732|Caenorhabditis elegans Hypothetical p... 31 0.68
AL033537-1|CAA22147.1| 732|Caenorhabditis elegans Hypothetical ... 31 0.68
L23648-5|AAN63385.1| 381|Caenorhabditis elegans Cyclin t protei... 31 1.2
L23648-4|AAA28033.2| 555|Caenorhabditis elegans Cyclin t protei... 31 1.2
AC024817-16|AAF59585.2| 610|Caenorhabditis elegans Hypothetical... 30 2.1
Z81518-1|CAB04214.3| 601|Caenorhabditis elegans Hypothetical pr... 29 3.6
AC024869-5|AAK68606.3| 1126|Caenorhabditis elegans Hypothetical ... 29 3.6
Z66521-8|CAA91394.1| 281|Caenorhabditis elegans Hypothetical pr... 29 4.8
U29381-14|ABI54346.1| 1840|Caenorhabditis elegans Hypothetical p... 29 4.8
U29381-13|ABI54348.1| 1898|Caenorhabditis elegans Hypothetical p... 29 4.8
U29381-12|AAM98022.3| 1671|Caenorhabditis elegans Hypothetical p... 29 4.8
U29381-11|ABI54347.1| 1911|Caenorhabditis elegans Hypothetical p... 29 4.8
U23168-4|AAU87833.1| 1379|Caenorhabditis elegans Temporarily ass... 29 4.8
U23168-3|AAU87831.1| 4034|Caenorhabditis elegans Temporarily ass... 29 4.8
U23168-2|AAC38806.2| 1633|Caenorhabditis elegans Temporarily ass... 29 4.8
U23168-1|AAU87832.1| 7548|Caenorhabditis elegans Temporarily ass... 29 4.8
U12964-4|AAA91219.3| 447|Caenorhabditis elegans Temporarily ass... 29 4.8
Z81122-13|CAB03356.3| 368|Caenorhabditis elegans Hypothetical p... 28 6.4
U41007-8|AAA82270.1| 179|Caenorhabditis elegans Sr protein (spl... 28 6.4
AF039044-4|AAG24122.3| 328|Caenorhabditis elegans Serpentine re... 28 6.4
AC024211-1|AAF36065.1| 252|Caenorhabditis elegans Hypothetical ... 28 6.4
U88183-2|AAM69080.1| 1273|Caenorhabditis elegans Sensory axon gu... 28 8.4
U88183-1|AAB52657.2| 1269|Caenorhabditis elegans Sensory axon gu... 28 8.4
U61948-1|AAB03144.2| 1432|Caenorhabditis elegans Hypothetical pr... 28 8.4
AF041053-1|AAC38848.1| 1273|Caenorhabditis elegans SAX-3 protein. 28 8.4
>U64842-1|AAB37083.2| 710|Caenorhabditis elegans Hypothetical
protein F25B4.5 protein.
Length = 710
Score = 40.7 bits (91), Expect = 0.001
Identities = 30/84 (35%), Positives = 36/84 (42%), Gaps = 3/84 (3%)
Frame = +3
Query: 510 RSGVDSPSSGGYLHRASSRDENDSHRAPSERTLSEYTTMDERTRSPSGNDHRNGRRHQQT 689
R S + Y +SSR DSHR +R D R RS S N RH+ T
Sbjct: 3 RDRSSSSDTDDYYRSSSSRKREDSHRRRDDRHRDSDRDRDRRRRSRS---RSNSNRHRTT 59
Query: 690 NGSPRADSA---SDVYVTSAAYRP 752
GS R+ S+ SD TS RP
Sbjct: 60 GGSQRSRSSRHGSDYKDTSLMTRP 83
>Z50874-10|CAA90770.1| 302|Caenorhabditis elegans Hypothetical
protein R10E4.11 protein.
Length = 302
Score = 36.3 bits (80), Expect = 0.024
Identities = 26/83 (31%), Positives = 41/83 (49%), Gaps = 2/83 (2%)
Frame = +3
Query: 177 CSSCQNKRINLRLHRNFCSNCSDLFESILTH*EKSKYEPKLSRNWNILTDVG*MKKYTIE 356
C C N+ ++R + N CS C E++ H EKS Y S++ + + T++
Sbjct: 181 CLECGNRLNDIRTN-NQCSVCKSYAENVEEH-EKSHYRTSTSKHAVMECRYCVRQFRTVK 238
Query: 357 --LEKKKEKMTDKQIRTTHF*KC 419
+E +KEK K +R T F KC
Sbjct: 239 EVIEHEKEKHLAKPLRKTQFFKC 261
>U58749-5|AAU05597.1| 1551|Caenorhabditis elegans Hypothetical protein
B0496.3a protein.
Length = 1551
Score = 34.3 bits (75), Expect = 0.097
Identities = 30/100 (30%), Positives = 43/100 (43%), Gaps = 7/100 (7%)
Frame = +3
Query: 480 LKNNHYVATHRSGVDSPSSGGYL----HRASSRDENDSHRAPSERTLSEYT---TMDERT 638
L + + + H SG +PS+ GY+ H S R DS P T S YT T D+R
Sbjct: 1083 LSTDPFYSHHSSGSAAPSALGYVRPRYHDDSYRTHRDSDYRPMSPT-SRYTAAVTRDDRG 1141
Query: 639 RSPSGNDHRNGRRHQQTNGSPRADSASDVYVTSAAYRPPS 758
+S S + H R G + +AS Y + P+
Sbjct: 1142 KSTSYDPHET-TRPSYDRGYITSSNASPSYTRKFEHEQPT 1180
>U58749-4|AAU05598.1| 1592|Caenorhabditis elegans Hypothetical protein
B0496.3b protein.
Length = 1592
Score = 34.3 bits (75), Expect = 0.097
Identities = 30/100 (30%), Positives = 43/100 (43%), Gaps = 7/100 (7%)
Frame = +3
Query: 480 LKNNHYVATHRSGVDSPSSGGYL----HRASSRDENDSHRAPSERTLSEYT---TMDERT 638
L + + + H SG +PS+ GY+ H S R DS P T S YT T D+R
Sbjct: 1124 LSTDPFYSHHSSGSAAPSALGYVRPRYHDDSYRTHRDSDYRPMSPT-SRYTAAVTRDDRG 1182
Query: 639 RSPSGNDHRNGRRHQQTNGSPRADSASDVYVTSAAYRPPS 758
+S S + H R G + +AS Y + P+
Sbjct: 1183 KSTSYDPHET-TRPSYDRGYITSSNASPSYTRKFEHEQPT 1221
>AF408761-1|AAO27840.1| 741|Caenorhabditis elegans Rap1GAP protein.
Length = 741
Score = 32.7 bits (71), Expect = 0.30
Identities = 17/42 (40%), Positives = 23/42 (54%)
Frame = +3
Query: 573 NDSHRAPSERTLSEYTTMDERTRSPSGNDHRNGRRHQQTNGS 698
N R S R + M ERT +P+ H+N + HQ+TNGS
Sbjct: 83 NMIERMQSNRLDDQRCEMPERTHNPTSG-HQNEQTHQKTNGS 123
>AF016660-1|AAK71368.1| 742|Caenorhabditis elegans Hypothetical
protein F53A10.2a protein.
Length = 742
Score = 32.7 bits (71), Expect = 0.30
Identities = 17/42 (40%), Positives = 23/42 (54%)
Frame = +3
Query: 573 NDSHRAPSERTLSEYTTMDERTRSPSGNDHRNGRRHQQTNGS 698
N R S R + M ERT +P+ H+N + HQ+TNGS
Sbjct: 84 NMIERMQSNRLDDQRCEMPERTHNPTSG-HQNEQTHQKTNGS 124
>Z99267-1|CAB16465.1| 732|Caenorhabditis elegans C33A12.12 protein.
Length = 732
Score = 31.5 bits (68), Expect = 0.68
Identities = 23/60 (38%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Frame = -1
Query: 489 CSL-ICAPFLFVFFF-SQLNHVNVTYIFKNGSFEFACPSFSLFFFLIQWYIFSFSPHLSK 316
CSL + F +V F SQ+++V VTY +FEF C SF LF Y+ P K
Sbjct: 654 CSLSVSLHFPYVCFSDSQIHNVQVTY---PRAFEFNCNSFMLFSVTFASYLLKTYPSTPK 710
>Z68493-14|CAA92801.1| 732|Caenorhabditis elegans Hypothetical
protein C33A12.12 protein.
Length = 732
Score = 31.5 bits (68), Expect = 0.68
Identities = 23/60 (38%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Frame = -1
Query: 489 CSL-ICAPFLFVFFF-SQLNHVNVTYIFKNGSFEFACPSFSLFFFLIQWYIFSFSPHLSK 316
CSL + F +V F SQ+++V VTY +FEF C SF LF Y+ P K
Sbjct: 654 CSLSVSLHFPYVCFSDSQIHNVQVTY---PRAFEFNCNSFMLFSVTFASYLLKTYPSTPK 710
>AL033537-1|CAA22147.1| 732|Caenorhabditis elegans Hypothetical
protein C33A12.12 protein.
Length = 732
Score = 31.5 bits (68), Expect = 0.68
Identities = 23/60 (38%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Frame = -1
Query: 489 CSL-ICAPFLFVFFF-SQLNHVNVTYIFKNGSFEFACPSFSLFFFLIQWYIFSFSPHLSK 316
CSL + F +V F SQ+++V VTY +FEF C SF LF Y+ P K
Sbjct: 654 CSLSVSLHFPYVCFSDSQIHNVQVTY---PRAFEFNCNSFMLFSVTFASYLLKTYPSTPK 710
>L23648-5|AAN63385.1| 381|Caenorhabditis elegans Cyclin t protein
1.2, isoform b protein.
Length = 381
Score = 30.7 bits (66), Expect = 1.2
Identities = 28/97 (28%), Positives = 43/97 (44%), Gaps = 8/97 (8%)
Frame = +3
Query: 444 EKKKRQTKMAHKLKNNHYVATHRSGVDSPSSGGYLHR---ASSRDENDSHRAPSERTLSE 614
+K Q M ++K HR+G SS LH +SS N +H+ S LS
Sbjct: 169 QKVVEQELMEQRMKEAAQQKIHRNGHRPSSSSHPLHHHSTSSSASNNSNHQNRSSSGLSA 228
Query: 615 YTTMDERTRSPSGNDHRNGRR---HQQTNGS--PRAD 710
+ + + P D R+ +R +++TN S PR D
Sbjct: 229 H-----QHQKPYNEDSRSAKRSMMYEETNSSKKPRID 260
>L23648-4|AAA28033.2| 555|Caenorhabditis elegans Cyclin t protein
1.2, isoform a protein.
Length = 555
Score = 30.7 bits (66), Expect = 1.2
Identities = 28/97 (28%), Positives = 43/97 (44%), Gaps = 8/97 (8%)
Frame = +3
Query: 444 EKKKRQTKMAHKLKNNHYVATHRSGVDSPSSGGYLHR---ASSRDENDSHRAPSERTLSE 614
+K Q M ++K HR+G SS LH +SS N +H+ S LS
Sbjct: 343 QKVVEQELMEQRMKEAAQQKIHRNGHRPSSSSHPLHHHSTSSSASNNSNHQNRSSSGLSA 402
Query: 615 YTTMDERTRSPSGNDHRNGRR---HQQTNGS--PRAD 710
+ + + P D R+ +R +++TN S PR D
Sbjct: 403 H-----QHQKPYNEDSRSAKRSMMYEETNSSKKPRID 434
>AC024817-16|AAF59585.2| 610|Caenorhabditis elegans Hypothetical
protein Y54G2A.13 protein.
Length = 610
Score = 29.9 bits (64), Expect = 2.1
Identities = 18/69 (26%), Positives = 32/69 (46%), Gaps = 3/69 (4%)
Frame = +1
Query: 571 KTTATEHLRRGRCQSTRQWTKEP--DRRL-AMTTGTAGGTSKRTARLGPTPRPMSTSLAL 741
K T++ LR RC+ QW K D++ + +T +S +A T P++T+ L
Sbjct: 86 KKTSSAQLRDQRCEGGLQWCKSHHLDKKCKSASTSVVNDSSNTSATATQTTTPLTTTFTL 145
Query: 742 PTDLLRKSV 768
++ V
Sbjct: 146 ENATTKEKV 154
>Z81518-1|CAB04214.3| 601|Caenorhabditis elegans Hypothetical
protein F28D9.1 protein.
Length = 601
Score = 29.1 bits (62), Expect = 3.6
Identities = 20/72 (27%), Positives = 30/72 (41%)
Frame = +3
Query: 552 RASSRDENDSHRAPSERTLSEYTTMDERTRSPSGNDHRNGRRHQQTNGSPRADSASDVYV 731
R S ++ S R+ S+ R RSPSG+ R+ RR + +PR +
Sbjct: 439 RRRSPSQSKSPAPRRRRSPSKSPQAPRRRRSPSGSKSRSPRRRRSPAAAPRRRQSPQRRR 498
Query: 732 TSAAYRPPSEIS 767
+ R PS S
Sbjct: 499 SPRRRRSPSSSS 510
>AC024869-5|AAK68606.3| 1126|Caenorhabditis elegans Hypothetical
protein Y75B7AL.4a protein.
Length = 1126
Score = 29.1 bits (62), Expect = 3.6
Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = +3
Query: 528 PSSGGYLHRASSRDEN-DSHRAPSERTLSEYTTMDE 632
PSSGG L R S+ D+N D+ R +R +E ++ E
Sbjct: 477 PSSGGALRRLSANDQNTDAMRFAKQRVSNEQMSVAE 512
>Z66521-8|CAA91394.1| 281|Caenorhabditis elegans Hypothetical
protein W02B12.2 protein.
Length = 281
Score = 28.7 bits (61), Expect = 4.8
Identities = 30/104 (28%), Positives = 47/104 (45%), Gaps = 2/104 (1%)
Frame = +3
Query: 414 KCTSH*RDLIEKK--KRQTKMAHKLKNNHYVATHRSGVDSPSSGGYLHRASSRDENDSHR 587
KCT RD + +R+++ ++ A RS S S AS + +D R
Sbjct: 180 KCTDETRDRSRSRSPRRRSRSRSPTRSRSPPARRRSP-GSDRSDRKSRSASPKKRSDK-R 237
Query: 588 APSERTLSEYTTMDERTRSPSGNDHRNGRRHQQTNGSPRADSAS 719
A SE + S + R+RS S + + ++ N SPR+ SAS
Sbjct: 238 ARSE-SKSRSRSGGRRSRSNSPPNRSPSPKKRRDNSSPRSGSAS 280
>U29381-14|ABI54346.1| 1840|Caenorhabditis elegans Hypothetical
protein F35D11.11a protein.
Length = 1840
Score = 28.7 bits (61), Expect = 4.8
Identities = 24/102 (23%), Positives = 42/102 (41%)
Frame = +3
Query: 414 KCTSH*RDLIEKKKRQTKMAHKLKNNHYVATHRSGVDSPSSGGYLHRASSRDENDSHRAP 593
K + R+L E+++ Q K+ ++N+ A HR HR ++ DSH
Sbjct: 412 KASEKIRNLEEQRESQEKLTISVQNSLNEA-HRQHKQFIEELMIRHREELKEREDSHEEA 470
Query: 594 SERTLSEYTTMDERTRSPSGNDHRNGRRHQQTNGSPRADSAS 719
+E + E+ RS R ++T S + D A+
Sbjct: 471 LRSKDTEERSRFEKERSEREKIRRESDELRETQRSLKGDVAA 512
>U29381-13|ABI54348.1| 1898|Caenorhabditis elegans Hypothetical
protein F35D11.11c protein.
Length = 1898
Score = 28.7 bits (61), Expect = 4.8
Identities = 24/102 (23%), Positives = 42/102 (41%)
Frame = +3
Query: 414 KCTSH*RDLIEKKKRQTKMAHKLKNNHYVATHRSGVDSPSSGGYLHRASSRDENDSHRAP 593
K + R+L E+++ Q K+ ++N+ A HR HR ++ DSH
Sbjct: 412 KASEKIRNLEEQRESQEKLTISVQNSLNEA-HRQHKQFIEELMIRHREELKEREDSHEEA 470
Query: 594 SERTLSEYTTMDERTRSPSGNDHRNGRRHQQTNGSPRADSAS 719
+E + E+ RS R ++T S + D A+
Sbjct: 471 LRSKDTEERSRFEKERSEREKIRRESDELRETQRSLKGDVAA 512
>U29381-12|AAM98022.3| 1671|Caenorhabditis elegans Hypothetical
protein F35D11.11d protein.
Length = 1671
Score = 28.7 bits (61), Expect = 4.8
Identities = 24/102 (23%), Positives = 42/102 (41%)
Frame = +3
Query: 414 KCTSH*RDLIEKKKRQTKMAHKLKNNHYVATHRSGVDSPSSGGYLHRASSRDENDSHRAP 593
K + R+L E+++ Q K+ ++N+ A HR HR ++ DSH
Sbjct: 172 KASEKIRNLEEQRESQEKLTISVQNSLNEA-HRQHKQFIEELMIRHREELKEREDSHEEA 230
Query: 594 SERTLSEYTTMDERTRSPSGNDHRNGRRHQQTNGSPRADSAS 719
+E + E+ RS R ++T S + D A+
Sbjct: 231 LRSKDTEERSRFEKERSEREKIRRESDELRETQRSLKGDVAA 272
>U29381-11|ABI54347.1| 1911|Caenorhabditis elegans Hypothetical
protein F35D11.11b protein.
Length = 1911
Score = 28.7 bits (61), Expect = 4.8
Identities = 24/102 (23%), Positives = 42/102 (41%)
Frame = +3
Query: 414 KCTSH*RDLIEKKKRQTKMAHKLKNNHYVATHRSGVDSPSSGGYLHRASSRDENDSHRAP 593
K + R+L E+++ Q K+ ++N+ A HR HR ++ DSH
Sbjct: 412 KASEKIRNLEEQRESQEKLTISVQNSLNEA-HRQHKQFIEELMIRHREELKEREDSHEEA 470
Query: 594 SERTLSEYTTMDERTRSPSGNDHRNGRRHQQTNGSPRADSAS 719
+E + E+ RS R ++T S + D A+
Sbjct: 471 LRSKDTEERSRFEKERSEREKIRRESDELRETQRSLKGDVAA 512
>U23168-4|AAU87833.1| 1379|Caenorhabditis elegans Temporarily
assigned gene nameprotein 308, isoform d protein.
Length = 1379
Score = 28.7 bits (61), Expect = 4.8
Identities = 25/107 (23%), Positives = 42/107 (39%)
Frame = +3
Query: 414 KCTSH*RDLIEKKKRQTKMAHKLKNNHYVATHRSGVDSPSSGGYLHRASSRDENDSHRAP 593
K H + L ++K+++ KM K ++ R S S+ + A + S R
Sbjct: 317 KIKDHKKQLKKEKEKKKKMDKKQSSSGGGFFTRWFGGSGSNNSQQNLAEDVIDARSERKT 376
Query: 594 SERTLSEYTTMDERTRSPSGNDHRNGRRHQQTNGSPRADSASDVYVT 734
+++ E ER + H RRHQQ + + D Y T
Sbjct: 377 AKQREQELLQRSERRSGGRTHSHEEYRRHQQPSLMVNTNFDEDDYAT 423
>U23168-3|AAU87831.1| 4034|Caenorhabditis elegans Temporarily
assigned gene nameprotein 308, isoform b protein.
Length = 4034
Score = 28.7 bits (61), Expect = 4.8
Identities = 25/107 (23%), Positives = 42/107 (39%)
Frame = +3
Query: 414 KCTSH*RDLIEKKKRQTKMAHKLKNNHYVATHRSGVDSPSSGGYLHRASSRDENDSHRAP 593
K H + L ++K+++ KM K ++ R S S+ + A + S R
Sbjct: 317 KIKDHKKQLKKEKEKKKKMDKKQSSSGGGFFTRWFGGSGSNNSQQNLAEDVIDARSERKT 376
Query: 594 SERTLSEYTTMDERTRSPSGNDHRNGRRHQQTNGSPRADSASDVYVT 734
+++ E ER + H RRHQQ + + D Y T
Sbjct: 377 AKQREQELLQRSERRSGGRTHSHEEYRRHQQPSLMVNTNFDEDDYAT 423
>U23168-2|AAC38806.2| 1633|Caenorhabditis elegans Temporarily
assigned gene nameprotein 308, isoform a protein.
Length = 1633
Score = 28.7 bits (61), Expect = 4.8
Identities = 25/107 (23%), Positives = 42/107 (39%)
Frame = +3
Query: 414 KCTSH*RDLIEKKKRQTKMAHKLKNNHYVATHRSGVDSPSSGGYLHRASSRDENDSHRAP 593
K H + L ++K+++ KM K ++ R S S+ + A + S R
Sbjct: 317 KIKDHKKQLKKEKEKKKKMDKKQSSSGGGFFTRWFGGSGSNNSQQNLAEDVIDARSERKT 376
Query: 594 SERTLSEYTTMDERTRSPSGNDHRNGRRHQQTNGSPRADSASDVYVT 734
+++ E ER + H RRHQQ + + D Y T
Sbjct: 377 AKQREQELLQRSERRSGGRTHSHEEYRRHQQPSLMVNTNFDEDDYAT 423
>U23168-1|AAU87832.1| 7548|Caenorhabditis elegans Temporarily
assigned gene nameprotein 308, isoform c protein.
Length = 7548
Score = 28.7 bits (61), Expect = 4.8
Identities = 25/107 (23%), Positives = 42/107 (39%)
Frame = +3
Query: 414 KCTSH*RDLIEKKKRQTKMAHKLKNNHYVATHRSGVDSPSSGGYLHRASSRDENDSHRAP 593
K H + L ++K+++ KM K ++ R S S+ + A + S R
Sbjct: 317 KIKDHKKQLKKEKEKKKKMDKKQSSSGGGFFTRWFGGSGSNNSQQNLAEDVIDARSERKT 376
Query: 594 SERTLSEYTTMDERTRSPSGNDHRNGRRHQQTNGSPRADSASDVYVT 734
+++ E ER + H RRHQQ + + D Y T
Sbjct: 377 AKQREQELLQRSERRSGGRTHSHEEYRRHQQPSLMVNTNFDEDDYAT 423
>U12964-4|AAA91219.3| 447|Caenorhabditis elegans Temporarily
assigned gene nameprotein 340 protein.
Length = 447
Score = 28.7 bits (61), Expect = 4.8
Identities = 16/45 (35%), Positives = 23/45 (51%)
Frame = +3
Query: 612 EYTTMDERTRSPSGNDHRNGRRHQQTNGSPRADSASDVYVTSAAY 746
E++T DE + S N HR GRR Q + A +A V+S +
Sbjct: 168 EFSTDDE---ARSNNRHRRGRRQQNSGNQSEAPTAVPSRVSSGVF 209
>Z81122-13|CAB03356.3| 368|Caenorhabditis elegans Hypothetical
protein T13F2.5 protein.
Length = 368
Score = 28.3 bits (60), Expect = 6.4
Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 4/44 (9%)
Frame = -1
Query: 483 LICAPFLFVFFFSQLNHVNVTYIFKN----GSFEFACPSFSLFF 364
L C F FV + H N+T++ KN F AC F ++F
Sbjct: 54 LECGVFFFVLCTNSQYHPNLTWLLKNLVAQYFFSMACRLFQIYF 97
>U41007-8|AAA82270.1| 179|Caenorhabditis elegans Sr protein
(splicing factor) protein6, isoform a protein.
Length = 179
Score = 28.3 bits (60), Expect = 6.4
Identities = 17/50 (34%), Positives = 23/50 (46%)
Frame = +3
Query: 552 RASSRDENDSHRAPSERTLSEYTTMDERTRSPSGNDHRNGRRHQQTNGSP 701
R SRD + ERT S + ER RS S + R+ R + + SP
Sbjct: 129 RDRSRDRSRERSRERERTRSRSRSPQERDRSHSKSRSRSRSRSRSRSASP 178
>AF039044-4|AAG24122.3| 328|Caenorhabditis elegans Serpentine
receptor, class t protein17 protein.
Length = 328
Score = 28.3 bits (60), Expect = 6.4
Identities = 15/51 (29%), Positives = 23/51 (45%)
Frame = -3
Query: 433 RQCDVHFQKWVVRICLSVIFSFFFSNSMVYFFI*PTSVKMFQFRDNFGSYF 281
R DV +W++RI + + YF I VK F +N+ S+F
Sbjct: 144 RAGDVDSNRWIMRIFDGLKIYIVLGICLAYFLITIFLVKPVVFNENYSSWF 194
>AC024211-1|AAF36065.1| 252|Caenorhabditis elegans Hypothetical
protein Y76B12C.4 protein.
Length = 252
Score = 28.3 bits (60), Expect = 6.4
Identities = 13/50 (26%), Positives = 23/50 (46%)
Frame = +1
Query: 571 KTTATEHLRRGRCQSTRQWTKEPDRRLAMTTGTAGGTSKRTARLGPTPRP 720
K+T T++ + + K+ + A+ TGT+G K+ P P P
Sbjct: 184 KSTETKNSTTPSTEKEKSSMKKTKKEAAVATGTSGSAKKKVRPPAPPPPP 233
>U88183-2|AAM69080.1| 1273|Caenorhabditis elegans Sensory axon
guidance protein 3,isoform b protein.
Length = 1273
Score = 27.9 bits (59), Expect = 8.4
Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 3/34 (8%)
Frame = +3
Query: 621 TMDERTRSPSGNDHR---NGRRHQQTNGSPRADS 713
T R+RS +D R NG H +T+GS R+DS
Sbjct: 1053 TAGRRSRSSRASDGRGTLNGGLHHRTSGSQRSDS 1086
>U88183-1|AAB52657.2| 1269|Caenorhabditis elegans Sensory axon
guidance protein 3,isoform a protein.
Length = 1269
Score = 27.9 bits (59), Expect = 8.4
Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 3/34 (8%)
Frame = +3
Query: 621 TMDERTRSPSGNDHR---NGRRHQQTNGSPRADS 713
T R+RS +D R NG H +T+GS R+DS
Sbjct: 1053 TAGRRSRSSRASDGRGTLNGGLHHRTSGSQRSDS 1086
>U61948-1|AAB03144.2| 1432|Caenorhabditis elegans Hypothetical
protein C46A5.4 protein.
Length = 1432
Score = 27.9 bits (59), Expect = 8.4
Identities = 14/30 (46%), Positives = 17/30 (56%)
Frame = -1
Query: 498 HNGCSLICAPFLFVFFFSQLNHVNVTYIFK 409
H CSL+ APFL F + + HV IFK
Sbjct: 140 HATCSLLIAPFL-SFIYDDIVHVPSNRIFK 168
>AF041053-1|AAC38848.1| 1273|Caenorhabditis elegans SAX-3 protein.
Length = 1273
Score = 27.9 bits (59), Expect = 8.4
Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 3/34 (8%)
Frame = +3
Query: 621 TMDERTRSPSGNDHR---NGRRHQQTNGSPRADS 713
T R+RS +D R NG H +T+GS R+DS
Sbjct: 1053 TAGRRSRSSRASDGRGTLNGGLHHRTSGSQRSDS 1086
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,340,546
Number of Sequences: 27780
Number of extensions: 395614
Number of successful extensions: 1427
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 1365
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1423
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1840614650
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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