Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte1b19
         (743 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0692 + 30973171-30973908                                         31   0.97 
06_01_0094 + 779097-779155,779882-781019,781732-782115,782842-78...    30   1.7  
03_04_0062 + 16965323-16966024                                         29   2.9  
02_01_0018 + 119890-120238,120331-120424,120518-121529                 29   2.9  
12_02_0875 - 23920023-23920967,23921045-23921599,23921678-239220...    29   5.2  
04_03_0926 - 20861383-20862198,20862359-20862430,20862938-208631...    28   6.8  
08_02_0656 - 19740436-19741593                                         28   9.0  
07_03_1231 + 25047067-25047262,25047876-25048045,25048897-250490...    28   9.0  
05_04_0230 + 19250513-19250633,19250681-19251165                       28   9.0  

>02_05_0692 + 30973171-30973908
          Length = 245

 Score = 31.1 bits (67), Expect = 0.97
 Identities = 15/31 (48%), Positives = 17/31 (54%)
 Frame = +2

Query: 302 RAHGGLRECRGPVSVQRARGDYIHGRRPRSH 394
           R  GG R+CRGP   Q  RG     R+PR H
Sbjct: 213 RLAGGGRQCRGPACRQSWRGGGASVRQPRIH 243


>06_01_0094 +
           779097-779155,779882-781019,781732-782115,782842-783060
          Length = 599

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 18/56 (32%), Positives = 29/56 (51%)
 Frame = -2

Query: 478 LIEQTQRWTIRANMPSTMLEMSVFSNAEM*AWSPAVNIVASSSLYRNRAAALAKTT 311
           LI    RWT  +  PST ++    S     + S ++N  +SS+L+ + AA L  +T
Sbjct: 431 LISSAVRWTASSRTPSTPIKFPAISRWYSVSVSTSIN--SSSNLFSSAAAVLRPST 484


>03_04_0062 + 16965323-16966024
          Length = 233

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 14/34 (41%), Positives = 17/34 (50%)
 Frame = +1

Query: 277 VATATCGGSGPRWSSRVPRPCFCTTSSRRLYSRP 378
           VATAT       WSS+  RP F T + R +   P
Sbjct: 8   VATATAAAGPTAWSSQKYRPGFATNAQRSIIRPP 41


>02_01_0018 + 119890-120238,120331-120424,120518-121529
          Length = 484

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +3

Query: 294 WGVGPTVVFASAAALFLYNELEATIFTAGDHA 389
           W VGPTV+   AA ++  + L A  +  GD A
Sbjct: 69  WVVGPTVMLLFAAVIYFTSNLLADCYRTGDPA 100


>12_02_0875 -
           23920023-23920967,23921045-23921599,23921678-23922083,
           23922175-23922452
          Length = 727

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
 Frame = +2

Query: 260 DSEMVELQRRRV--GGRAHGGLRECRGPVSVQRARGDYIHGRRPRSHLCVGEDAHLKHGA 433
           D+++ E  RRRV  GGR HGG+    G  + + +RG         +       A  +HG 
Sbjct: 437 DAKLREDSRRRVNVGGRNHGGVG--GGEATKRLSRGHKSMQDTTAAATAAAVVASQRHGH 494

Query: 434 GHVGSD 451
           GHV ++
Sbjct: 495 GHVHAE 500


>04_03_0926 -
           20861383-20862198,20862359-20862430,20862938-20863123,
           20863214-20863304,20863698-20863852,20864501-20864579,
           20866797-20867263
          Length = 621

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 17/60 (28%), Positives = 27/60 (45%)
 Frame = -1

Query: 395 DVSVVSGREYSRLELVVQKQGRGTREDHRGPDPPHVAVATQPFRYRFQVRVTNITMCREA 216
           ++S+   R  + L L+     RG        D P + + T PF +  Q  V N+ +C EA
Sbjct: 303 NISLFESRLGAMLFLISALLSRGLERIQADRDDPSLPLVTAPFGHASQ-EVVNLLLCGEA 361


>08_02_0656 - 19740436-19741593
          Length = 385

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 12/38 (31%), Positives = 17/38 (44%)
 Frame = +1

Query: 199 WRVDQLASLHIVIFVTLTWKR*RNG*VATATCGGSGPR 312
           W   Q   +H  ++  + W+  R G VA    GG G R
Sbjct: 309 WPAGQRVGVHASLWEKMVWEEQRGGWVADEEVGGGGVR 346


>07_03_1231 +
           25047067-25047262,25047876-25048045,25048897-25049030,
           25049122-25049369,25049799-25049904,25049992-25050130,
           25050258-25050385,25050472-25050733
          Length = 460

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 12/40 (30%), Positives = 23/40 (57%)
 Frame = +3

Query: 354 LEATIFTAGDHAHISALEKTLISSMVLGMLALMVHLWVCS 473
           L+  IF++   + I   EK  + + ++GMLA  + +W C+
Sbjct: 269 LDLRIFSSSKPSFIKITEKRAVQA-IMGMLASSIRVWHCA 307


>05_04_0230 + 19250513-19250633,19250681-19251165
          Length = 201

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 13/28 (46%), Positives = 14/28 (50%)
 Frame = +1

Query: 253 WKR*RNG*VATATCGGSGPRWSSRVPRP 336
           W+R R    A A  GGSG RW     RP
Sbjct: 163 WRRERGRPAAGAGSGGSGGRWQRERDRP 190


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,208,575
Number of Sequences: 37544
Number of extensions: 448863
Number of successful extensions: 1224
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1186
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1222
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1968901276
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)