Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte1b19
         (743 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB209560-1|BAD92797.1| 1011|Homo sapiens polymerase (DNA directe...    32   1.9  
AK130577-1|BAC85385.1|  478|Homo sapiens protein ( Homo sapiens ...    31   4.4  
D86976-1|BAA13212.1| 1165|Homo sapiens KIAA0223 protein.               30   7.6  
BC035564-1|AAH35564.1| 1131|Homo sapiens HMHA1 protein protein.        30   7.6  
AF308066-1|AAN04658.1| 1136|Homo sapiens minor histocompatibilit...    30   7.6  

>AB209560-1|BAD92797.1| 1011|Homo sapiens polymerase (DNA directed),
            delta 1, catalytic subunit 125kDa variant protein.
          Length = 1011

 Score = 32.3 bits (70), Expect = 1.9
 Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
 Frame = +1

Query: 289  TCGGSGPRWSSRVPRPCFC--TTSSRRLYSR 375
            +C  S P W+  VPR C+C  TT + R  SR
Sbjct: 934  SCASSSPSWARAVPRLCYCGGTTRAARRCSR 964


>AK130577-1|BAC85385.1|  478|Homo sapiens protein ( Homo sapiens
           cDNA FLJ27067 fis, clone SPL01356, highly similar to Ig
           gamma-1 chain C region. ).
          Length = 478

 Score = 31.1 bits (67), Expect = 4.4
 Identities = 15/24 (62%), Positives = 18/24 (75%), Gaps = 1/24 (4%)
 Frame = +3

Query: 264 AKWLSCNG-DVWGVGPTVVFASAA 332
           AKWL  +G DVWG G TVV +SA+
Sbjct: 127 AKWLYYSGMDVWGRGTTVVVSSAS 150


>D86976-1|BAA13212.1| 1165|Homo sapiens KIAA0223 protein.
          Length = 1165

 Score = 30.3 bits (65), Expect = 7.6
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +2

Query: 356 RGDYIHGRRPRSHLCVGEDAHLKH 427
           R D +  RRPR+H C+GE   + H
Sbjct: 168 RDDLLEARRPRAHECLGEALRVMH 191


>BC035564-1|AAH35564.1| 1131|Homo sapiens HMHA1 protein protein.
          Length = 1131

 Score = 30.3 bits (65), Expect = 7.6
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +2

Query: 356 RGDYIHGRRPRSHLCVGEDAHLKH 427
           R D +  RRPR+H C+GE   + H
Sbjct: 134 RDDLLEARRPRAHECLGEALRVMH 157


>AF308066-1|AAN04658.1| 1136|Homo sapiens minor histocompatibility
           antigen HA-1 protein.
          Length = 1136

 Score = 30.3 bits (65), Expect = 7.6
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +2

Query: 356 RGDYIHGRRPRSHLCVGEDAHLKH 427
           R D +  RRPR+H C+GE   + H
Sbjct: 139 RDDLLEARRPRAHECLGEALRVMH 162


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 107,808,087
Number of Sequences: 237096
Number of extensions: 2392752
Number of successful extensions: 5970
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5668
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5969
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8903143626
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)