Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte1b19
         (743 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U97193-13|AAO38676.1|  215|Caenorhabditis elegans Hypothetical p...    29   3.5  
U97193-12|AAB52441.1|  283|Caenorhabditis elegans Hypothetical p...    29   3.5  
Z93397-7|CAB07722.2|  483|Caenorhabditis elegans Hypothetical pr...    29   4.6  
Z93372-6|CAB07549.2|  483|Caenorhabditis elegans Hypothetical pr...    29   4.6  
AF026212-1|AAF99971.1|  807|Caenorhabditis elegans Hypothetical ...    29   4.6  
Z82056-5|CAB04856.1|  378|Caenorhabditis elegans Hypothetical pr...    28   6.1  
Z81129-9|CAB03410.1|  378|Caenorhabditis elegans Hypothetical pr...    28   6.1  
AL034393-10|CAA22323.1|  228|Caenorhabditis elegans Hypothetical...    28   6.1  

>U97193-13|AAO38676.1|  215|Caenorhabditis elegans Hypothetical
           protein C06A5.8b protein.
          Length = 215

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 18/47 (38%), Positives = 26/47 (55%)
 Frame = -2

Query: 358 SSSLYRNRAAALAKTTVGPTPHTSPLQLNHFAIVSK*ESQISQCAEK 218
           SSSL R     L++       HT  LQ++H AI +K E++ + C EK
Sbjct: 164 SSSLVRGFQIGLSRLFRNRRIHTEHLQVDHGAIATKLETR-AACTEK 209


>U97193-12|AAB52441.1|  283|Caenorhabditis elegans Hypothetical
           protein C06A5.8a protein.
          Length = 283

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 18/47 (38%), Positives = 26/47 (55%)
 Frame = -2

Query: 358 SSSLYRNRAAALAKTTVGPTPHTSPLQLNHFAIVSK*ESQISQCAEK 218
           SSSL R     L++       HT  LQ++H AI +K E++ + C EK
Sbjct: 232 SSSLVRGFQIGLSRLFRNRRIHTEHLQVDHGAIATKLETR-AACTEK 277


>Z93397-7|CAB07722.2|  483|Caenorhabditis elegans Hypothetical
           protein ZC482.5 protein.
          Length = 483

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 13/46 (28%), Positives = 28/46 (60%)
 Frame = +3

Query: 534 EMTTAGLLGSQHSDIVVLGPLTKFLKNQQPQIHITICWFLSLCYAD 671
           +M TAGL+G++  D + +  LT  ++ ++ ++   + W+  LC+ D
Sbjct: 365 QMFTAGLMGARRRDTIQVDDLT--VEKEEARLK-AVPWWKKLCFKD 407


>Z93372-6|CAB07549.2|  483|Caenorhabditis elegans Hypothetical
           protein ZC482.5 protein.
          Length = 483

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 13/46 (28%), Positives = 28/46 (60%)
 Frame = +3

Query: 534 EMTTAGLLGSQHSDIVVLGPLTKFLKNQQPQIHITICWFLSLCYAD 671
           +M TAGL+G++  D + +  LT  ++ ++ ++   + W+  LC+ D
Sbjct: 365 QMFTAGLMGARRRDTIQVDDLT--VEKEEARLK-AVPWWKKLCFKD 407


>AF026212-1|AAF99971.1|  807|Caenorhabditis elegans Hypothetical
           protein F52G3.3 protein.
          Length = 807

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = +2

Query: 530 ARNDNSGSTRQSAFGYCGPRSFDEV 604
           ARN  + +TR  A   CGP SFDE+
Sbjct: 147 ARNLQAIATRLLAMNMCGPTSFDEL 171


>Z82056-5|CAB04856.1|  378|Caenorhabditis elegans Hypothetical
           protein T26H5.5 protein.
          Length = 378

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 15/56 (26%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
 Frame = +3

Query: 528 LLEMTTAGLLGSQHSDIVV--LGPLTKFLKNQQPQIHITICWFLSLCYADYVRKHY 689
           L+++  +  +GS+  +++V  +  L   +      IH  +C+FLS  Y D VR+ +
Sbjct: 296 LVKVIVSEAIGSEGMNLIVDRIASLFPLIITINGAIHFFLCYFLSSQYRDAVREMF 351


>Z81129-9|CAB03410.1|  378|Caenorhabditis elegans Hypothetical
           protein T26H5.5 protein.
          Length = 378

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 15/56 (26%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
 Frame = +3

Query: 528 LLEMTTAGLLGSQHSDIVV--LGPLTKFLKNQQPQIHITICWFLSLCYADYVRKHY 689
           L+++  +  +GS+  +++V  +  L   +      IH  +C+FLS  Y D VR+ +
Sbjct: 296 LVKVIVSEAIGSEGMNLIVDRIASLFPLIITINGAIHFFLCYFLSSQYRDAVREMF 351


>AL034393-10|CAA22323.1|  228|Caenorhabditis elegans Hypothetical
           protein Y18D10A.12 protein.
          Length = 228

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = +2

Query: 296 GGRAHGGLRECRGPVSVQRARGDYIHGRRPRS 391
           GGR+ GG +      S   +  DY HGR P S
Sbjct: 20  GGRSRGGYKSYSSFSSSSSSEEDYHHGRPPHS 51


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,983,701
Number of Sequences: 27780
Number of extensions: 361135
Number of successful extensions: 956
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 934
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 956
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1756472266
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)