Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte1b18
(590 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1351 - 32827136-32827984 31 0.91
07_03_1643 + 28329090-28329125,28329260-28329335,28329413-28330305 30 1.2
03_06_0600 + 34988743-34989407,34990033-34990051 29 2.8
09_01_0067 + 1001137-1002708,1003476-1003529 29 3.7
08_01_0679 - 5933187-5933258,5933378-5933592,5934527-5934569 29 3.7
10_02_0079 + 5016115-5016936 28 6.4
07_03_1700 - 28810239-28810870,28811304-28812594 28 6.4
12_02_0756 + 22839673-22839870,22839961-22842194,22842280-228425... 27 8.5
04_04_0622 + 26663471-26663620,26663822-26664384,26664483-266646... 27 8.5
04_03_0799 - 19805190-19805749,19806316-19806403 27 8.5
01_07_0040 + 40672633-40673369,40673412-40673558,40675019-406752... 27 8.5
01_01_1125 - 8920590-8924372 27 8.5
>04_04_1351 - 32827136-32827984
Length = 282
Score = 30.7 bits (66), Expect = 0.91
Identities = 15/55 (27%), Positives = 24/55 (43%)
Frame = +1
Query: 349 VALLLSGTLGVAYSYGMFSPEKTLTTIVRPPGACDPPKMQCPNTPAPAPDKDCPL 513
+A ++ G +G G +SP + AC P P+TP P+ CP+
Sbjct: 151 IAPVVGGIIGGGSGGGGYSPSPSPPKRHGGRKACPPSPTPTPSTPTPSSSDTCPI 205
>07_03_1643 + 28329090-28329125,28329260-28329335,28329413-28330305
Length = 334
Score = 30.3 bits (65), Expect = 1.2
Identities = 13/27 (48%), Positives = 14/27 (51%)
Frame = +1
Query: 439 PGACDPPKMQCPNTPAPAPDKDCPLRP 519
P A PP P+ PAPAP P RP
Sbjct: 210 PAAKAPPAAPAPSMPAPAPTLSSPERP 236
>03_06_0600 + 34988743-34989407,34990033-34990051
Length = 227
Score = 29.1 bits (62), Expect = 2.8
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = +1
Query: 424 TIVRPPGACDPPKMQCPNTPAPAP 495
+++ PPG+ P + CP P P P
Sbjct: 136 SLLHPPGSAASPSVSCPPPPPPPP 159
>09_01_0067 + 1001137-1002708,1003476-1003529
Length = 541
Score = 28.7 bits (61), Expect = 3.7
Identities = 11/25 (44%), Positives = 11/25 (44%)
Frame = +1
Query: 436 PPGACDPPKMQCPNTPAPAPDKDCP 510
PP PP P P P PD D P
Sbjct: 20 PPPPSPPPADHAPPQPLPTPDDDAP 44
>08_01_0679 - 5933187-5933258,5933378-5933592,5934527-5934569
Length = 109
Score = 28.7 bits (61), Expect = 3.7
Identities = 16/52 (30%), Positives = 21/52 (40%), Gaps = 1/52 (1%)
Frame = +1
Query: 364 SGTLGVAYSYGMFSPEKTLTTIVRPPGACDPPKMQCPNTPAPAPDKD-CPLR 516
SG + G+F P + T +PP A QC +T P CP R
Sbjct: 5 SGASSLPTGGGIFEPPSSSTATAQPPVATAAIHFQCASTACRCPHLSLCPQR 56
>10_02_0079 + 5016115-5016936
Length = 273
Score = 27.9 bits (59), Expect = 6.4
Identities = 18/53 (33%), Positives = 24/53 (45%)
Frame = +1
Query: 352 ALLLSGTLGVAYSYGMFSPEKTLTTIVRPPGACDPPKMQCPNTPAPAPDKDCP 510
A+L SG+ G A + + +L P A PPK TP AP K+ P
Sbjct: 130 AVLCSGSGGPAPGHQLRLYTLSLEVWGAAPTAVAPPKPAAAATPTTAPAKNAP 182
>07_03_1700 - 28810239-28810870,28811304-28812594
Length = 640
Score = 27.9 bits (59), Expect = 6.4
Identities = 10/21 (47%), Positives = 14/21 (66%), Gaps = 2/21 (9%)
Frame = +1
Query: 439 PGACDPPKMQC--PNTPAPAP 495
PG C PP +C P++P P+P
Sbjct: 221 PGLCGPPLAKCLLPDSPTPSP 241
>12_02_0756 +
22839673-22839870,22839961-22842194,22842280-22842531,
22842612-22842722,22842812-22842893,22843168-22843359
Length = 1022
Score = 27.5 bits (58), Expect = 8.5
Identities = 17/55 (30%), Positives = 25/55 (45%)
Frame = +1
Query: 355 LLLSGTLGVAYSYGMFSPEKTLTTIVRPPGACDPPKMQCPNTPAPAPDKDCPLRP 519
++LS + A S S + T PP +PP Q P P+P P + P +P
Sbjct: 543 IILSAAVLAAGSSTPSSSQAMTATAPAPPSPPEPPSPQHP--PSPPPLRSPPRQP 595
>04_04_0622 +
26663471-26663620,26663822-26664384,26664483-26664675,
26664801-26664865,26665182-26665398,26665485-26665823
Length = 508
Score = 27.5 bits (58), Expect = 8.5
Identities = 15/39 (38%), Positives = 17/39 (43%)
Frame = +1
Query: 403 SPEKTLTTIVRPPGACDPPKMQCPNTPAPAPDKDCPLRP 519
SPE T+ R PP+ P PAPAPD P
Sbjct: 69 SPEPE-PTLPRLGNLAPPPRQPPPPAPAPAPDAAAAASP 106
>04_03_0799 - 19805190-19805749,19806316-19806403
Length = 215
Score = 27.5 bits (58), Expect = 8.5
Identities = 15/31 (48%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Frame = +1
Query: 436 PPGACDPPKM-QCPNTPAPAPDKDCPLRPCD 525
PP AC PP QC + PAP K P +PC+
Sbjct: 110 PPPACCPPSTHQCYHC-CPAPPKPKP-KPCE 138
>01_07_0040 +
40672633-40673369,40673412-40673558,40675019-40675223,
40676730-40676816
Length = 391
Score = 27.5 bits (58), Expect = 8.5
Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Frame = +1
Query: 337 QTKLVALLLSGTLGVAYSYGMFS-PEKTLTTIVRPPGACDPPKMQCPNTPA 486
+T L+ LLL L +A S + S P T TT +P PP+ + P+ A
Sbjct: 8 KTLLLLLLLVFFLSLACSQPLHSEPMSTTTTATQPAPPPPPPQSKIPHAEA 58
>01_01_1125 - 8920590-8924372
Length = 1260
Score = 27.5 bits (58), Expect = 8.5
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = -2
Query: 397 FRTNTPHLMFPIITKRPVSFAPISISA 317
FR TPHL PI + + PISI A
Sbjct: 106 FRLETPHLNKPISKQAQNQYKPISIQA 132
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,304,456
Number of Sequences: 37544
Number of extensions: 362002
Number of successful extensions: 1194
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1092
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1184
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1400060088
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -