Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte1b16
         (672 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0201 - 23555336-23556008,23556097-23556258,23556353-235572...    32   0.48 
12_02_0719 + 22500217-22500395,22500506-22500551,22500671-225007...    29   4.5  
06_01_0520 + 3761990-3762327,3763304-3763589,3763746-3763820,376...    29   4.5  
01_01_0092 + 722744-723459,723542-723711,723792-724885                 29   4.5  
05_05_0149 - 22733703-22736216                                         28   5.9  
06_03_0683 - 23490215-23490997                                         28   7.8  
06_02_0341 + 14778915-14778961,14778982-14779860,14780101-14782804     28   7.8  

>04_04_0201 -
           23555336-23556008,23556097-23556258,23556353-23557206,
           23557452-23557613,23558197-23558649,23559729-23559788,
           23559983-23560058,23561546-23561593,23561948-23562022,
           23562067-23562494
          Length = 996

 Score = 31.9 bits (69), Expect = 0.48
 Identities = 23/81 (28%), Positives = 38/81 (46%)
 Frame = +2

Query: 416 TYSLPVNSSAADVTAELTSDGYLVVTAPISENVDKTKNTERVVPIVETGAPYKKDEPVEK 595
           T S+ V+  AA      + +G + VT+ +S+ VD+      V+P+    A  + DE   K
Sbjct: 659 TASMQVHEGAAAAQLGESPEG-VDVTSAVSDEVDRDDKATHVLPLAAAAADGESDELERK 717

Query: 596 TTVETLDVSTTQEPKTSAPAV 658
                LD   T +  T++ AV
Sbjct: 718 R--RKLDSCATMDMSTASRAV 736


>12_02_0719 +
           22500217-22500395,22500506-22500551,22500671-22500745,
           22500846-22500932,22501077-22501148,22501267-22501338,
           22501448-22501519,22501644-22502510
          Length = 489

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 15/55 (27%), Positives = 23/55 (41%)
 Frame = +2

Query: 491 TAPISENVDKTKNTERVVPIVETGAPYKKDEPVEKTTVETLDVSTTQEPKTSAPA 655
           T P+ +   K +      P+ ET      +E    T  ETL V   +E  T++ A
Sbjct: 274 TTPMVQTEVKLEEETETTPVAETTEVKPAEETETSTVAETLQVKPAEETDTTSMA 328


>06_01_0520 + 3761990-3762327,3763304-3763589,3763746-3763820,
            3764013-3764961,3766967-3767064,3768144-3768284,
            3768758-3768874,3768924-3769013,3769014-3771818
          Length = 1632

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 15/31 (48%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
 Frame = +1

Query: 169  HVPMAEPFAI-QSVCSFVEADPHFCGHRAKN 258
            HVPM EP  I  S C  V AD    G   KN
Sbjct: 1336 HVPMQEPLRIASSCCEIVNADQVCAGEVGKN 1366


>01_01_0092 + 722744-723459,723542-723711,723792-724885
          Length = 659

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = +2

Query: 146 VSITDDQFTFPWLNLSPFSLFAPLWKLIPTFVDIGPRIY 262
           +S  + +F     NL   S   PLW  +P F D+G ++Y
Sbjct: 92  ISYNESRFWVVDANLDNSSCPLPLWNNLPYFNDMGTKLY 130


>05_05_0149 - 22733703-22736216
          Length = 837

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
 Frame = +2

Query: 488 VTAPISENVDKTKNTERV--VPIVETGAPYKKDEPVEKTTVETLDVSTTQEPKTSA 649
           + AP  ENVDK++ T ++   P+ E     + +E +++  VE    S+  E K  A
Sbjct: 553 MNAPAPENVDKSEETSKISTTPVTEDKEIAEIEEYMKQCQVEEQLASSISEEKFRA 608


>06_03_0683 - 23490215-23490997
          Length = 260

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 11/45 (24%), Positives = 26/45 (57%)
 Frame = -1

Query: 153 METGCAITSLSRAGKAVTVAKPAKAMKTAKRRGENIFLDIRVSNS 19
           ++TG   ++L++  + +T     K + +  +R E I++D+R+  S
Sbjct: 76  IKTGMPTSTLTKHLRGLTSKGVLKVVNSVHKRAEKIYMDVRIDPS 120


>06_02_0341 + 14778915-14778961,14778982-14779860,14780101-14782804
          Length = 1209

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 18/45 (40%), Positives = 26/45 (57%), Gaps = 5/45 (11%)
 Frame = -2

Query: 671 VLQSLPLELMSSAPES*K----RPRFLLSSFLQARPS-CTERQSR 552
           VLQS+P +  SS+P S K     P F+ SS  ++R S C  ++ R
Sbjct: 258 VLQSVPTQQQSSSPSSSKLRADAPEFIPSSIKKSRASRCKAKKKR 302


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,112,284
Number of Sequences: 37544
Number of extensions: 274019
Number of successful extensions: 931
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 907
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 931
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1703141568
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)