Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte1b13
         (511 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase Ppk29|Schizos...    28   0.93 
SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces...    26   3.8  
SPAC17H9.18c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual       25   6.6  
SPBC32H8.13c |mok12||alpha-1,3-glucan synthase Mok12|Schizosacch...    25   8.7  

>SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase
           Ppk29|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 872

 Score = 27.9 bits (59), Expect = 0.93
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = +3

Query: 66  IASHLNLHKMSNMKEQEQNTAKLVMNAFYSVDGKNGVTAADIT 194
           + SH N+   S+   +EQ  AKL  +AF S     G + A+ T
Sbjct: 502 LTSHTNITTSSHHNPREQEIAKLADDAFASFRQTAGTSTANST 544


>SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 565

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 14/22 (63%), Positives = 15/22 (68%)
 Frame = -2

Query: 156 RCRMRS*PVSPCSVLAPSCLTF 91
           R + RS PVSPCS  APS  TF
Sbjct: 384 RYQRRSRPVSPCST-APSSPTF 404


>SPAC17H9.18c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 105

 Score = 25.0 bits (52), Expect = 6.6
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +3

Query: 3   SLIGFHVFFFVIQHLINI*NVIASHLNLHKMSN 101
           SLI F++   +IQHL  I  +I++   L   SN
Sbjct: 49  SLIVFYILIMIIQHLKEIHYLISASAKLLLASN 81


>SPBC32H8.13c |mok12||alpha-1,3-glucan synthase
            Mok12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2352

 Score = 24.6 bits (51), Expect = 8.7
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -3

Query: 497  TNMYYNFENETWRFNL 450
            + M YN EN TW ++L
Sbjct: 990  SKMSYNLENRTWSYDL 1005


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,949,235
Number of Sequences: 5004
Number of extensions: 35630
Number of successful extensions: 112
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 204242806
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)