Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte1b12
         (758 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3B8.05 |||diphthamide biosynthesis protein |Schizosaccharomy...    27   2.9  
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    27   2.9  
SPAC7D4.02c |||src |Schizosaccharomyces pombe|chr 1|||Manual           27   3.8  
SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|...    27   3.8  
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    26   6.7  
SPBC776.06c |||spindle pole body interacting protein |Schizosacc...    25   8.9  

>SPBC3B8.05 |||diphthamide biosynthesis protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 436

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = +3

Query: 45  NVKLKKTL*HIVFVKVMEAGLFLLTGVLMFGLFL 146
           N ++ KT+ HI   K     L L  G+LMFG  L
Sbjct: 74  NFEIHKTIWHIRLRKAKRVALQLPEGLLMFGCIL 107


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 22/71 (30%), Positives = 28/71 (39%), Gaps = 3/71 (4%)
 Frame = -2

Query: 250 NCESLAKSAYCEYPSPVFPSNLINLSTILRTSSPTKNKPNISTPVNKNN---PASITFTK 80
           NC +     Y   P    P    N +T   TS P  + P  STP+   N     SI +T 
Sbjct: 426 NCTTSTSVPYTSTPVTSTPLATTNCTT--STSVPYTSTPVTSTPLTTTNCTTSTSIPYTS 483

Query: 79  TMCQSVFLSLT 47
           T   S  L+ T
Sbjct: 484 TPVTSTPLTTT 494



 Score = 25.4 bits (53), Expect = 8.9
 Identities = 18/61 (29%), Positives = 24/61 (39%), Gaps = 3/61 (4%)
 Frame = -2

Query: 250 NCESLAKSAYCEYPSPVFPSNLINLSTILRTSSPTKNKPNISTPVNKNN---PASITFTK 80
           NC +     Y   P    P    N +T   TS P  + P  STP+   N     S+ +T 
Sbjct: 449 NCTTSTSVPYTSTPVTSTPLTTTNCTT--STSIPYTSTPVTSTPLTTTNCTTSTSVPYTS 506

Query: 79  T 77
           T
Sbjct: 507 T 507


>SPAC7D4.02c |||src |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 415

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = -2

Query: 202 VFPSNLINLSTILRTSSPTKNKPNISTPVN 113
           VFPSN    ST+     P +  P +  PVN
Sbjct: 299 VFPSNQATASTLQLAPPPVQAIPTLRNPVN 328


>SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 534

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 12/54 (22%), Positives = 27/54 (50%)
 Frame = -2

Query: 175 STILRTSSPTKNKPNISTPVNKNNPASITFTKTMCQSVFLSLTLIYNTFESQPR 14
           S  +  S+  ++   I   +  ++P +I   K +C+ +  S+   Y  ++SQP+
Sbjct: 335 SAFIEPSTNRESDEPIHLCIMSHDPNAIQRAKVLCEDLIASVHQQYKAWKSQPK 388


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +3

Query: 276 CDFCNQIQ*LSHLGEN 323
           C FC +I+ L+HLG N
Sbjct: 733 CSFCKEIRTLAHLGYN 748


>SPBC776.06c |||spindle pole body interacting protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 598

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +3

Query: 123 VLMFGLFLVGEDVRKMVDKLI 185
           V+ FGL+ + + VRK V KL+
Sbjct: 564 VIAFGLYHISDKVRKAVSKLL 584


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,720,445
Number of Sequences: 5004
Number of extensions: 51669
Number of successful extensions: 158
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 363302114
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)