Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte1b12
         (758 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0642 + 10086400-10086505,10086675-10087014,10087072-100871...    33   0.25 
02_03_0407 - 18675368-18675378,18676047-18676977,18677323-186773...    30   1.7  
06_01_0911 - 7031099-7031779,7031896-7032221,7032306-7032318,703...    29   5.3  
01_05_0507 - 22800124-22800163,22800411-22800554,22801291-228018...    29   5.3  
12_01_0979 - 9914779-9915327,9915409-9915536,9915947-9916050,991...    28   9.3  
03_01_0071 + 580988-581134,581276-581359,581499-581573,581892-58...    28   9.3  

>03_02_0642 +
           10086400-10086505,10086675-10087014,10087072-10087156,
           10088679-10088764,10089154-10089331,10089425-10089624,
           10089964-10090297
          Length = 442

 Score = 33.1 bits (72), Expect = 0.25
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = +2

Query: 353 DYLLWQWELSSCSVPLLFQY 412
           DYL W W L  C +P LF Y
Sbjct: 134 DYLYWDWHLDDCLLPRLFSY 153


>02_03_0407 -
           18675368-18675378,18676047-18676977,18677323-18677376,
           18677809-18678039,18678112-18678319,18678405-18678433,
           18678638-18678706,18678832-18678893,18679056-18679133,
           18679243-18679315,18681135-18681260
          Length = 623

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
 Frame = -2

Query: 232 KSAYCEYPSPVFPSNLINLSTILRTSSP--TKNKPNISTPVNKNNP 101
           K  +  + +P+F  NL++ +  LR   P  TK+   + TPV  +NP
Sbjct: 326 KPEFATHSAPLFAGNLLDETDRLRQMRPSSTKHSYRLPTPVGADNP 371


>06_01_0911 -
           7031099-7031779,7031896-7032221,7032306-7032318,
           7032402-7032414,7032498-7032510,7032592-7032790
          Length = 414

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = +2

Query: 350 GDYLLWQWELSSCSVPLL 403
           G YL W+W+ +SC++P L
Sbjct: 132 GGYLHWRWQPASCNLPAL 149


>01_05_0507 -
           22800124-22800163,22800411-22800554,22801291-22801850,
           22803207-22803264,22803885-22804124,22804191-22804315
          Length = 388

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 15/46 (32%), Positives = 19/46 (41%)
 Frame = -2

Query: 139 KPNISTPVNKNNPASITFTKTMCQSVFLSLTLIYNTFESQPRLYWT 2
           KP+ STP      A  +      Q  +LSL L    + S P   WT
Sbjct: 48  KPSASTPATSWTAACASIADLPSQGRWLSLALFTKLYASTPSTSWT 93


>12_01_0979 -
           9914779-9915327,9915409-9915536,9915947-9916050,
           9919832-9919946,9921036-9921528
          Length = 462

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 11/41 (26%), Positives = 21/41 (51%)
 Frame = -2

Query: 211 PSPVFPSNLINLSTILRTSSPTKNKPNISTPVNKNNPASIT 89
           PSP  P   +    + R + PT+  P + + V+ + P S++
Sbjct: 28  PSPPPPPQRLRCGWVGRAAPPTRRAPGVCSVVSPSKPGSLS 68


>03_01_0071 +
           580988-581134,581276-581359,581499-581573,581892-581973,
           582078-582223,582337-582408,582765-582837,582933-582998,
           583089-583123,583316-583387,583494-583622,583706-583813,
           584062-584118,584323-584439,584530-584612,585345-585411,
           585705-585776,585874-585924,586704-586763,586867-587016,
           587107-587322
          Length = 653

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 20/74 (27%), Positives = 34/74 (45%), Gaps = 11/74 (14%)
 Frame = -2

Query: 205 PVFPSNLINLSTILRTSSPTK----------NKPNISTPVNK-NNPASITFTKTMCQSVF 59
           P+   + +N+  +  TS+ TK          ++  I  P    +NPA      T  Q   
Sbjct: 221 PLSERSALNIKGVFNTSNETKYEKDATDVNCSRKRIELPNEHFSNPALTAANLTRWQKFV 280

Query: 58  LSLTLIYNTFESQP 17
            +LT++ +TFE+QP
Sbjct: 281 SNLTVVLSTFEAQP 294


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,058,484
Number of Sequences: 37544
Number of extensions: 283904
Number of successful extensions: 635
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 622
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 634
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2027850416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)