Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte1b11
         (760 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBPB21E7.04c ||SPAPB21E7.04c, SPAPB21E7.04c|S-adenosylmethionin...    29   0.95 
SPAC1B3.10c |||SEL1 repeat protein, unknown biological role|Schi...    27   2.2  
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch...    26   6.7  
SPCC1753.03c |rec7||meiotic recombination protein Rec7 |Schizosa...    26   6.7  
SPAC31G5.15 |||phosphatidylserine decarboxylase |Schizosaccharom...    25   8.9  
SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces...    25   8.9  
SPBC19C7.09c |uve1|uvde|endonuclease Uve1 |Schizosaccharomyces p...    25   8.9  

>SPBPB21E7.04c ||SPAPB21E7.04c,
           SPAPB21E7.04c|S-adenosylmethionine-dependent
           methyltransferase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 281

 Score = 28.7 bits (61), Expect = 0.95
 Identities = 15/42 (35%), Positives = 21/42 (50%)
 Frame = +1

Query: 385 LVSSGDLTAGAVQLWLGLPEEVKYDPALAAFRRYYESEYENV 510
           L+  G + A    L  G+PE VKY      +R+ Y+S   NV
Sbjct: 201 LIGQGSIIAADNILRPGVPEYVKYVQGSLDYRKEYDSTVSNV 242


>SPAC1B3.10c |||SEL1 repeat protein, unknown biological
           role|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 680

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 18/48 (37%), Positives = 24/48 (50%)
 Frame = +1

Query: 448 VKYDPALAAFRRYYESEYENVEEITLKPRNSLPRLRLPTVKSAPHLNN 591
           V+   AL   R YYE E    EEI ++  +++  LR     SA H NN
Sbjct: 60  VRVQRALEILRYYYEQEDVTYEEIIIQRNHAIELLR-----SASHDNN 102


>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2609

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 12/41 (29%), Positives = 21/41 (51%)
 Frame = +1

Query: 268  VS*KDKNKCENRMDKILRSVKDWSASRNGSSEISKSQYSLV 390
            VS   + +C  + DKI++S+  W +    S    K  +SL+
Sbjct: 1402 VSDLKQTECNAQSDKIIKSITYWQSLLFNSKTYQKDLFSLL 1442


>SPCC1753.03c |rec7||meiotic recombination protein Rec7
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 339

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 11/50 (22%), Positives = 25/50 (50%)
 Frame = +1

Query: 307 DKILRSVKDWSASRNGSSEISKSQYSLVSSGDLTAGAVQLWLGLPEEVKY 456
           + ++ +   ++ +RN  S  + SQY ++++  L +     W+  PE   Y
Sbjct: 238 ENVVITSSPFNPNRNAYSYGANSQYPIIAATPLNSQTQASWVAQPENQAY 287


>SPAC31G5.15 |||phosphatidylserine decarboxylase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 980

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = -1

Query: 547 LGGSSSVSALSPQRFHIHFHS 485
           +GGS  +S L+PQ +H  FHS
Sbjct: 820 VGGSICISRLAPQDYH-RFHS 839


>SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1639

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 13/24 (54%), Positives = 16/24 (66%)
 Frame = +2

Query: 215 VNYLHKLPVFVPVKKEF*FRKRIR 286
           +N + KLP FVPV  EF F+K  R
Sbjct: 614 LNNIPKLPRFVPVPSEF-FKKNQR 636


>SPBC19C7.09c |uve1|uvde|endonuclease Uve1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 599

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = -1

Query: 496 HFHSSAGTQPVQGHISLLPVIPTIAAQLQRSGRRKK 389
           H H+       +G + L+P+IPTI     R G  +K
Sbjct: 461 HHHNIVPGTLREGSLDLMPLIPTIRETWTRKGITQK 496


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,925,428
Number of Sequences: 5004
Number of extensions: 57060
Number of successful extensions: 179
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 179
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 363302114
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)