Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte1b09
(772 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC28E12.02 ||SPBC9B6.13|RNA-binding protein|Schizosaccharomyce... 27 2.2
SPAC16A10.03c |||zinc finger protein Pep5/Vps11 |Schizosaccharom... 27 2.2
SPBC16H5.03c |fub2|uba2|SUMO E1-like activator enzyme Fub2|Schiz... 27 3.0
SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharo... 27 3.9
SPAC2F7.17 |||peptide chain release factor|Schizosaccharomyces p... 27 3.9
SPAC8F11.03 |msh3|swi4|MutS protein homolog 3|Schizosaccharomyce... 26 5.2
SPCC962.05 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||... 26 6.9
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 26 6.9
SPBC1289.04c |pob1||Boi family protein|Schizosaccharomyces pombe... 25 9.1
SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin homolog|Sc... 25 9.1
>SPBC28E12.02 ||SPBC9B6.13|RNA-binding protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 663
Score = 27.5 bits (58), Expect = 2.2
Identities = 9/17 (52%), Positives = 14/17 (82%)
Frame = +3
Query: 129 YKENGEAEPENSEVEVF 179
+KE GE PENS+V+++
Sbjct: 346 FKEGGETSPENSKVKIY 362
>SPAC16A10.03c |||zinc finger protein Pep5/Vps11
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 860
Score = 27.5 bits (58), Expect = 2.2
Identities = 12/40 (30%), Positives = 22/40 (55%)
Frame = +1
Query: 439 KSGEEIIPKTTKIERAKAMNNEKKSKFKSKILNRNYDDNF 558
K+GE + + I KA++ EK+ +L ++YD+ F
Sbjct: 284 KNGENGLENNSSIREIKALDVEKRYVLYESLLEQSYDNIF 323
>SPBC16H5.03c |fub2|uba2|SUMO E1-like activator enzyme
Fub2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 628
Score = 27.1 bits (57), Expect = 3.0
Identities = 21/68 (30%), Positives = 28/68 (41%)
Frame = +1
Query: 205 VKDKTLNDSALNVLPETKKKGIYVEKRNFAQKTQVTKRLKTLPNQITRRRDNKQFLSSVL 384
V KT + NV E I ++ N A Q L N RR NKQ L + +
Sbjct: 83 VAAKTASSFNPNVKLEAYHANIKEDRFNVAWFRQFDLVFNALDNLDARRHVNKQCLLASV 142
Query: 385 NILSKGTT 408
++ GTT
Sbjct: 143 PLIESGTT 150
>SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1388
Score = 26.6 bits (56), Expect = 3.9
Identities = 27/95 (28%), Positives = 44/95 (46%), Gaps = 4/95 (4%)
Frame = +1
Query: 283 RNFAQKTQ--VTKRLKTLPNQIT--RRRDNKQFLSSVLNILSKGTTSTQFPEPAPDKSGE 450
+NF K+ ++ KT P + T RR+ K + S I S +T+ P PA +S +
Sbjct: 1203 QNFGIKSSPAISTNGKTQPKKQTANRRQSGKPNVKSAQKIES----ATRTPSPAISESRK 1258
Query: 451 EIIPKTTKIERAKAMNNEKKSKFKSKILNRNYDDN 555
+ K TKIE + +S+ S + + D N
Sbjct: 1259 KPSSKDTKIETPS--REQSRSQTASPVKSEKDDGN 1291
>SPAC2F7.17 |||peptide chain release factor|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 396
Score = 26.6 bits (56), Expect = 3.9
Identities = 15/58 (25%), Positives = 28/58 (48%)
Frame = +3
Query: 3 HQIKNKKPHEHVNDKYN*KNIRTTQPQHENYSSYATVNIK*RYKENGEAEPENSEVEV 176
HQ+ NK ND K I + H YS + +++ + + EA+ ++EV++
Sbjct: 52 HQVNNKDQSAMTNDTDLAKRIARLRRVHNAYSKFKSLSEQISDLKQMEAQESDAEVKM 109
>SPAC8F11.03 |msh3|swi4|MutS protein homolog 3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1004
Score = 26.2 bits (55), Expect = 5.2
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = +1
Query: 286 NFAQKTQVTKRLKTLPNQITRRRDNKQFLSSVLNILSKGTT 408
NF K V ++ +T + T N F V +L+KGTT
Sbjct: 173 NFGLKVAVVRQTETAALKSTSSSRNTLFDRRVARVLTKGTT 213
>SPCC962.05 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 536
Score = 25.8 bits (54), Expect = 6.9
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = -2
Query: 366 LFVVASPCDLIWQRFQTFSHLCLLREVSLLD 274
L V P DL+ TF H+C + E S+ D
Sbjct: 222 LGVEGHPLDLVIDYHNTFEHICKILENSVKD 252
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 25.8 bits (54), Expect = 6.9
Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Frame = +1
Query: 661 IAKEVLEGKKTKRVTI-DEPATLVSEHKANDKNLYN 765
I KE+ ++TKR T D+ A L ++H D+ YN
Sbjct: 113 IVKEITN-ERTKRYTFYDDDAPLTNQHTVLDEATYN 147
>SPBC1289.04c |pob1||Boi family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 871
Score = 25.4 bits (53), Expect = 9.1
Identities = 14/59 (23%), Positives = 26/59 (44%)
Frame = +1
Query: 388 ILSKGTTSTQFPEPAPDKSGEEIIPKTTKIERAKAMNNEKKSKFKSKILNRNYDDNFIV 564
+LS G T+ + PAP + ++ K+ NNE+ ++ S L + + V
Sbjct: 756 VLSGGKTAIKLIPPAPGAAKAAVMFTPPKVHYFTCENNEELHRWSSAFLKATVERDMSV 814
>SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin
homolog|Schizosaccharomyces pombe|chr 3|||Manual
Length = 997
Score = 25.4 bits (53), Expect = 9.1
Identities = 13/50 (26%), Positives = 26/50 (52%)
Frame = +1
Query: 610 SDQSRDVCKINSNNVTAIAKEVLEGKKTKRVTIDEPATLVSEHKANDKNL 759
++ S + K+ ++ TAI E + K + ++ L+SE + +DK L
Sbjct: 555 TEDSHEPVKVTEDSQTAIHVSKFEDLENKSMESEQSLQLLSESENDDKPL 604
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,691,751
Number of Sequences: 5004
Number of extensions: 49642
Number of successful extensions: 172
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 172
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 371330890
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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