Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte1b07
(730 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF016423-3|AAB65322.1| 221|Caenorhabditis elegans Hypothetical ... 252 2e-67
AF016423-4|AAX88829.1| 185|Caenorhabditis elegans Hypothetical ... 251 4e-67
AL034365-5|CAA22258.1| 172|Caenorhabditis elegans Hypothetical ... 112 3e-25
AC024756-2|AAK29884.1| 413|Caenorhabditis elegans Hypothetical ... 59 4e-09
Z79603-10|CAI79233.1| 224|Caenorhabditis elegans Hypothetical p... 43 3e-04
U39999-7|AAY44012.1| 232|Caenorhabditis elegans Hypothetical pr... 38 0.010
U39999-8|AAY44011.1| 146|Caenorhabditis elegans Hypothetical pr... 34 0.12
U23177-2|AAA64331.2| 538|Caenorhabditis elegans Hypothetical pr... 31 0.64
U00046-1|AAC47044.3| 2560|Caenorhabditis elegans Temporarily ass... 30 1.5
AL132876-15|CAD21668.2| 722|Caenorhabditis elegans Hypothetical... 30 1.9
AB096636-1|BAC76736.1| 722|Caenorhabditis elegans tyrosyl-tRNA ... 30 1.9
AC024881-2|AAK71414.1| 274|Caenorhabditis elegans Serpentine re... 29 2.6
Z92829-7|CAB07347.1| 284|Caenorhabditis elegans Hypothetical pr... 29 3.4
AF067217-2|AAF99977.1| 1887|Caenorhabditis elegans Heavy chain, ... 29 4.5
Z81546-10|CAH10812.1| 674|Caenorhabditis elegans Hypothetical p... 28 5.9
Z81546-9|CAD45596.2| 782|Caenorhabditis elegans Hypothetical pr... 28 5.9
Z81546-8|CAB04456.1| 676|Caenorhabditis elegans Hypothetical pr... 28 5.9
Z81529-5|CAB04296.1| 288|Caenorhabditis elegans Hypothetical pr... 28 5.9
Z48582-8|CAB70201.1| 3178|Caenorhabditis elegans Hypothetical pr... 28 5.9
Z48544-10|CAB70192.1| 3178|Caenorhabditis elegans Hypothetical p... 28 5.9
U41559-1|AAC24260.1| 373|Caenorhabditis elegans Hypothetical pr... 28 5.9
AY313179-1|AAP79304.1| 782|Caenorhabditis elegans myotubularin-... 28 5.9
AY313177-1|AAP79302.1| 676|Caenorhabditis elegans myotubularin-... 28 5.9
Z79639-1|CAB01916.1| 2948|Caenorhabditis elegans Hypothetical pr... 28 7.9
>AF016423-3|AAB65322.1| 221|Caenorhabditis elegans Hypothetical
protein F40A3.3a protein.
Length = 221
Score = 252 bits (617), Expect = 2e-67
Identities = 114/190 (60%), Positives = 145/190 (76%), Gaps = 3/190 (1%)
Frame = +2
Query: 146 RAMSTVA-KSFEASQVVPDVIPK-APAALLQVKYPSGVEVKEGNELTPTQVKDEPSVKWD 319
R ++T+A ++F +V+PDV+ P+ ++ VK+ SGVE GN LTPTQVKD P VKWD
Sbjct: 32 RGLATMAAEAFTKHEVIPDVLASNPPSKVVSVKFNSGVEANLGNVLTPTQVKDTPEVKWD 91
Query: 320 AEPGQYYTLAMTDPDAPSRKEPTFREWHHWLVGNIQGNEVNSGETLSQYVGSGPPEKTGL 499
AEPG YTL TDPDAPSRKEPT+REWHHWLV NI GN++ G+TLS+Y+G+GPP KTGL
Sbjct: 92 AEPGALYTLIKTDPDAPSRKEPTYREWHHWLVVNIPGNDIAKGDTLSEYIGAGPPPKTGL 151
Query: 500 HRYVFLLYKQPSKL-TFDEPRLTNTSSDKRANFKIAEFAKKYNLGDPIAGNFYEAQYDDY 676
HRYV+L+YKQ ++ + RLTNTS DKR +K A+F K+ LG P+ GN ++A+YDDY
Sbjct: 152 HRYVYLIYKQSGRIEDAEHGRLTNTSGDKRGGWKAADFVAKHKLGAPVFGNLFQAEYDDY 211
Query: 677 VPILYKQLGA 706
VPIL KQLGA
Sbjct: 212 VPILNKQLGA 221
>AF016423-4|AAX88829.1| 185|Caenorhabditis elegans Hypothetical
protein F40A3.3b protein.
Length = 185
Score = 251 bits (614), Expect = 4e-67
Identities = 112/183 (61%), Positives = 140/183 (76%), Gaps = 2/183 (1%)
Frame = +2
Query: 164 AKSFEASQVVPDVIPK-APAALLQVKYPSGVEVKEGNELTPTQVKDEPSVKWDAEPGQYY 340
A++F +V+PDV+ P+ ++ VK+ SGVE GN LTPTQVKD P VKWDAEPG Y
Sbjct: 3 AEAFTKHEVIPDVLASNPPSKVVSVKFNSGVEANLGNVLTPTQVKDTPEVKWDAEPGALY 62
Query: 341 TLAMTDPDAPSRKEPTFREWHHWLVGNIQGNEVNSGETLSQYVGSGPPEKTGLHRYVFLL 520
TL TDPDAPSRKEPT+REWHHWLV NI GN++ G+TLS+Y+G+GPP KTGLHRYV+L+
Sbjct: 63 TLIKTDPDAPSRKEPTYREWHHWLVVNIPGNDIAKGDTLSEYIGAGPPPKTGLHRYVYLI 122
Query: 521 YKQPSKL-TFDEPRLTNTSSDKRANFKIAEFAKKYNLGDPIAGNFYEAQYDDYVPILYKQ 697
YKQ ++ + RLTNTS DKR +K A+F K+ LG P+ GN ++A+YDDYVPIL KQ
Sbjct: 123 YKQSGRIEDAEHGRLTNTSGDKRGGWKAADFVAKHKLGAPVFGNLFQAEYDDYVPILNKQ 182
Query: 698 LGA 706
LGA
Sbjct: 183 LGA 185
>AL034365-5|CAA22258.1| 172|Caenorhabditis elegans Hypothetical
protein Y69E1A.5 protein.
Length = 172
Score = 112 bits (269), Expect = 3e-25
Identities = 62/180 (34%), Positives = 96/180 (53%), Gaps = 7/180 (3%)
Frame = +2
Query: 152 MSTVAKSFEASQVVPDVIPKAPAALLQVKYPSGVEVKEGNELTPTQVKDEPSVKW---DA 322
MS ++ +F ++ P +I AP L + + G++V+ G + +K+ P +W A
Sbjct: 1 MSDISAAFAQHEITPKIIENAPKQKLHLCW-DGIQVEPGMTMQVRNLKNAP--RWALPGA 57
Query: 323 EPGQYYTLAMTDPDAPSRKEPTFREWHHWLVGNIQGNE----VNSGETLSQYVGSGPPEK 490
+P YT+ M DPD SRK P+ EW HWLV NI + +N G+ Y P +
Sbjct: 58 DPESIYTVLMIDPDNLSRKNPSVAEWLHWLVCNIPASNIIDGINGGQHQMAYGSPAPGPR 117
Query: 491 TGLHRYVFLLYKQPSKLTFDEPRLTNTSSDKRANFKIAEFAKKYNLGDPIAGNFYEAQYD 670
T LHRYV L+++ + R++ RA F + +F +K LGDPIAGNF+ AQ++
Sbjct: 118 TDLHRYVILMWEHAGR------RISVPKPSSRAKFNVKQFIEKNKLGDPIAGNFFLAQHE 171
>AC024756-2|AAK29884.1| 413|Caenorhabditis elegans Hypothetical
protein Y34D9A.1 protein.
Length = 413
Score = 58.8 bits (136), Expect = 4e-09
Identities = 43/163 (26%), Positives = 75/163 (46%), Gaps = 4/163 (2%)
Frame = +2
Query: 227 LQVKYPSGVEVKEGNELTPTQVKDEPSVKWDA--EPGQYYTLAMTDPDAPSRKEPTFREW 400
LQV + + + V GN +T P + ++ G + TL M + D + E
Sbjct: 157 LQVNFENDIVVHSGNVITANSTLKRPEITIESVGNGGGFNTLLMINLDGNALDLGKNGEI 216
Query: 401 HHWLVGNI-QGNEVNSGETLSQYVGSGPPEKTGLHRYVFLLYKQPSKLTFDEPRLTNTSS 577
W++ NI G +++G + Y+ P TG HR F+L++ + F ++ S
Sbjct: 217 VQWMISNIPDGEAISAGSEIIDYLQPLPFYGTGYHRVAFVLFRHEKPVDF---QIQGNSL 273
Query: 578 DKRANFKIAEFAKKYNLG-DPIAGNFYEAQYDDYVPILYKQLG 703
D R + +I++F KK+ P A F++ YD+ V + LG
Sbjct: 274 DTRIH-EISKFYKKHEATITPSAIRFFQTSYDNSVKMALHGLG 315
>Z79603-10|CAI79233.1| 224|Caenorhabditis elegans Hypothetical
protein M163.11 protein.
Length = 224
Score = 42.7 bits (96), Expect = 3e-04
Identities = 26/81 (32%), Positives = 40/81 (49%)
Frame = +3
Query: 456 CPSTWALDLRKRQACTDTCSSCTNNHRSSHSTSRDSLTLRATNVPISKLPSSPRSTT*GI 635
C ST+ +K Q C TCS C+++ SS S+S S + ++ S SS S++
Sbjct: 18 CTSTFYTTAQKTQYCASTCSLCSDSSDSSSSSSTASTSSSSSTAATSSDDSSSSSSSSSS 77
Query: 636 RLRATSTKRSMTTTSLFCTSS 698
+TS+ + T S TSS
Sbjct: 78 SASSTSSSDTTTADSSSTTSS 98
Score = 30.3 bits (65), Expect = 1.5
Identities = 15/43 (34%), Positives = 23/43 (53%)
Frame = +3
Query: 456 CPSTWALDLRKRQACTDTCSSCTNNHRSSHSTSRDSLTLRATN 584
C S++ K Q C TCS C+++ SS S+S S + T+
Sbjct: 147 CTSSFYTTAIKTQYCAATCSLCSSSSDSSSSSSTASTSSSCTD 189
>U39999-7|AAY44012.1| 232|Caenorhabditis elegans Hypothetical
protein F41G3.20 protein.
Length = 232
Score = 37.5 bits (83), Expect = 0.010
Identities = 26/85 (30%), Positives = 39/85 (45%)
Frame = +3
Query: 447 AKLCPSTWALDLRKRQACTDTCSSCTNNHRSSHSTSRDSLTLRATNVPISKLPSSPRSTT 626
A C ++ L L K+Q C TC CT++ ++ S+S + L + +S P T
Sbjct: 101 ASYCANSAYLTLMKQQ-CPKTCGYCTSSSATTTSSSSTCIDLTNASTGVSDCPGMASYCT 159
Query: 627 *GIRLRATSTKRSMTTTSLFCTSSS 701
L T K+ T +CTSSS
Sbjct: 160 NSAYL--TLMKQQCPKTCGYCTSSS 182
Score = 29.5 bits (63), Expect = 2.6
Identities = 15/36 (41%), Positives = 21/36 (58%)
Frame = +3
Query: 447 AKLCPSTWALDLRKRQACTDTCSSCTNNHRSSHSTS 554
A C ++ L L K+Q C TC CT++ SS S+S
Sbjct: 155 ASYCTNSAYLTLMKQQ-CPKTCGYCTSSSSSSSSSS 189
>U39999-8|AAY44011.1| 146|Caenorhabditis elegans Hypothetical
protein F41G3.19 protein.
Length = 146
Score = 33.9 bits (74), Expect = 0.12
Identities = 23/83 (27%), Positives = 36/83 (43%)
Frame = +3
Query: 447 AKLCPSTWALDLRKRQACTDTCSSCTNNHRSSHSTSRDSLTLRATNVPISKLPSSPRSTT 626
A C ++ L L K Q C TC CT++ +S +TS S + TN + ++
Sbjct: 64 ASYCTNSVYLTLMKTQ-CPKTCGYCTSSSSTSSTTSSSSTCVDLTNASTGVSDCTRMASY 122
Query: 627 *GIRLRATSTKRSMTTTSLFCTS 695
+ T K+ T +CTS
Sbjct: 123 CTNSIYLTLMKQQCPKTCGYCTS 145
>U23177-2|AAA64331.2| 538|Caenorhabditis elegans Hypothetical
protein C56G2.4 protein.
Length = 538
Score = 31.5 bits (68), Expect = 0.64
Identities = 21/79 (26%), Positives = 37/79 (46%), Gaps = 4/79 (5%)
Frame = +2
Query: 404 HWLVGNIQGNEVNS----GETLSQYVGSGPPEKTGLHRYVFLLYKQPSKLTFDEPRLTNT 571
HWL +I +N+ G T + YV P + + H Y+F+L QP+ + E
Sbjct: 375 HWLEVDIPAANLNAANGNGLTKADYVPLIPKKPSTCHSYLFVLLAQPASMQTLE-SYCEG 433
Query: 572 SSDKRANFKIAEFAKKYNL 628
+ R F++ F +++ L
Sbjct: 434 MCETRKKFRLELFKQQHGL 452
>U00046-1|AAC47044.3| 2560|Caenorhabditis elegans Temporarily
assigned gene nameprotein 152, isoform a protein.
Length = 2560
Score = 30.3 bits (65), Expect = 1.5
Identities = 21/55 (38%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
Frame = -2
Query: 501 CRPVFSGG-PEPTYWDKVSPEFTSLPWMLPTSQWCHSRNVGSLRDG--ASGSVMA 346
CRP SGG P PTY D S P T+Q + VG++ +G +G MA
Sbjct: 18 CRPHTSGGAPNPTYSD-ASTTLLKYPLAAGTNQNRRRQQVGTMNNGDPVAGGPMA 71
>AL132876-15|CAD21668.2| 722|Caenorhabditis elegans Hypothetical
protein Y105E8A.19 protein.
Length = 722
Score = 29.9 bits (64), Expect = 1.9
Identities = 28/98 (28%), Positives = 42/98 (42%), Gaps = 5/98 (5%)
Frame = +2
Query: 269 NELTPTQVKDEPSVKWDA-EPGQYYTLAMTDPDAPSRKEPTF----REWHHWLVGNIQGN 433
N L +V+ + V DA E G ++ T+P P + P E W + GN
Sbjct: 324 NLLEKVRVRCDTDVVRDAKEKGYNHSTDSTEPAIPPSEAPKIPSLSSEQKQWKDQLLNGN 383
Query: 434 EVNSGETLSQYVGSGPPEKTGLHRYVFLLYKQPSKLTF 547
E+ GE L + + P+K LH L++ P K F
Sbjct: 384 EILIGEELDRVLADVSPQKP-LH----LMFIAPGKGRF 416
>AB096636-1|BAC76736.1| 722|Caenorhabditis elegans tyrosyl-tRNA
synthetase (cytoplasmic)protein.
Length = 722
Score = 29.9 bits (64), Expect = 1.9
Identities = 28/98 (28%), Positives = 42/98 (42%), Gaps = 5/98 (5%)
Frame = +2
Query: 269 NELTPTQVKDEPSVKWDA-EPGQYYTLAMTDPDAPSRKEPTF----REWHHWLVGNIQGN 433
N L +V+ + V DA E G ++ T+P P + P E W + GN
Sbjct: 324 NLLEKVRVRCDTDVVRDAKEKGYNHSTDSTEPAIPPSEAPKIPSLSSEQKQWKDQLLNGN 383
Query: 434 EVNSGETLSQYVGSGPPEKTGLHRYVFLLYKQPSKLTF 547
E+ GE L + + P+K LH L++ P K F
Sbjct: 384 EILIGEELDRVLADVSPQKP-LH----LMFIAPGKGRF 416
>AC024881-2|AAK71414.1| 274|Caenorhabditis elegans Serpentine
receptor, class sx protein7 protein.
Length = 274
Score = 29.5 bits (63), Expect = 2.6
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = -3
Query: 530 VVCTRGTRICAGLSFPEVQSPRT 462
++C GT + GL+FP++Q RT
Sbjct: 58 IICLLGTMVDVGLAFPDIQLDRT 80
>Z92829-7|CAB07347.1| 284|Caenorhabditis elegans Hypothetical
protein F10A3.11 protein.
Length = 284
Score = 29.1 bits (62), Expect = 3.4
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = -3
Query: 653 RSCPQSDPLGCTSWRTRQF 597
+SCP D GCT+W+ F
Sbjct: 251 KSCPSVDSYGCTNWKNYDF 269
>AF067217-2|AAF99977.1| 1887|Caenorhabditis elegans Heavy chain,
unconventional myosinprotein 7 protein.
Length = 1887
Score = 28.7 bits (61), Expect = 4.5
Identities = 18/56 (32%), Positives = 28/56 (50%)
Frame = +2
Query: 2 IASRSLIFGLISRHPFFLVCERQEMGALIRCAIVLLTVATMVNFRVLTRAMSTVAK 169
+A +IF L F V E ++MG +RC V++ + N VL R M +A+
Sbjct: 1629 LAEPIIIFDLYEN--FLNVSEVEDMGERVRCLSVMIELLPKPNRAVLDRLMYHLAR 1682
>Z81546-10|CAH10812.1| 674|Caenorhabditis elegans Hypothetical
protein F53A2.8c protein.
Length = 674
Score = 28.3 bits (60), Expect = 5.9
Identities = 25/81 (30%), Positives = 41/81 (50%)
Frame = +3
Query: 474 LDLRKRQACTDTCSSCTNNHRSSHSTSRDSLTLRATNVPISKLPSSPRSTT*GIRLRATS 653
L ++ Q T T ++ TN S S++ D L N+ +S P P S+T I RATS
Sbjct: 540 LKTQQNQQITST-NTPTNMVDSGMSSATDDLK----NLSLSH-PLDPLSSTLPILERATS 593
Query: 654 TKRSMTTTSLFCTSSSVLKYA 716
+ + +SL+ ++ KY+
Sbjct: 594 QESGVMDSSLYYPDEALTKYS 614
>Z81546-9|CAD45596.2| 782|Caenorhabditis elegans Hypothetical
protein F53A2.8b protein.
Length = 782
Score = 28.3 bits (60), Expect = 5.9
Identities = 25/81 (30%), Positives = 41/81 (50%)
Frame = +3
Query: 474 LDLRKRQACTDTCSSCTNNHRSSHSTSRDSLTLRATNVPISKLPSSPRSTT*GIRLRATS 653
L ++ Q T T ++ TN S S++ D L N+ +S P P S+T I RATS
Sbjct: 648 LKTQQNQQITST-NTPTNMVDSGMSSATDDLK----NLSLSH-PLDPLSSTLPILERATS 701
Query: 654 TKRSMTTTSLFCTSSSVLKYA 716
+ + +SL+ ++ KY+
Sbjct: 702 QESGVMDSSLYYPDEALTKYS 722
>Z81546-8|CAB04456.1| 676|Caenorhabditis elegans Hypothetical
protein F53A2.8a protein.
Length = 676
Score = 28.3 bits (60), Expect = 5.9
Identities = 25/81 (30%), Positives = 41/81 (50%)
Frame = +3
Query: 474 LDLRKRQACTDTCSSCTNNHRSSHSTSRDSLTLRATNVPISKLPSSPRSTT*GIRLRATS 653
L ++ Q T T ++ TN S S++ D L N+ +S P P S+T I RATS
Sbjct: 542 LKTQQNQQITST-NTPTNMVDSGMSSATDDLK----NLSLSH-PLDPLSSTLPILERATS 595
Query: 654 TKRSMTTTSLFCTSSSVLKYA 716
+ + +SL+ ++ KY+
Sbjct: 596 QESGVMDSSLYYPDEALTKYS 616
>Z81529-5|CAB04296.1| 288|Caenorhabditis elegans Hypothetical
protein F35E8.7 protein.
Length = 288
Score = 28.3 bits (60), Expect = 5.9
Identities = 17/67 (25%), Positives = 28/67 (41%), Gaps = 1/67 (1%)
Frame = +3
Query: 498 CTDTCSSCTNNHRSSHSTSRDSLTLRATNVPISKLPSSPRS-TT*GIRLRATSTKRSMTT 674
C TC CT+ ++ ST+ + + ++P + TT T + TT
Sbjct: 183 CRKTCKRCTSGPTATTSTAAPAAPTTTVAPAVVTTTAAPAAVTTTAAVTTTTVAAAAATT 242
Query: 675 TSLFCTS 695
T+ CTS
Sbjct: 243 TAAACTS 249
>Z48582-8|CAB70201.1| 3178|Caenorhabditis elegans Hypothetical
protein ZK945.9 protein.
Length = 3178
Score = 28.3 bits (60), Expect = 5.9
Identities = 25/93 (26%), Positives = 37/93 (39%)
Frame = +3
Query: 402 TTGWLATSRATR*TPAKLCPSTWALDLRKRQACTDTCSSCTNNHRSSHSTSRDSLTLRAT 581
TT +T +T P T A+ T T T+ +S +++ S T T
Sbjct: 283 TTTVTSTVTSTTTVPTSTSTVTTAMSTSTSTPSTSTTIESTSTTFTSTASTSTSST-STT 341
Query: 582 NVPISKLPSSPRSTT*GIRLRATSTKRSMTTTS 680
S + SSP STT + T+T +T S
Sbjct: 342 QQSSSTITSSPSSTTLSTSIPTTTTPEITSTLS 374
>Z48544-10|CAB70192.1| 3178|Caenorhabditis elegans Hypothetical
protein ZK945.9 protein.
Length = 3178
Score = 28.3 bits (60), Expect = 5.9
Identities = 25/93 (26%), Positives = 37/93 (39%)
Frame = +3
Query: 402 TTGWLATSRATR*TPAKLCPSTWALDLRKRQACTDTCSSCTNNHRSSHSTSRDSLTLRAT 581
TT +T +T P T A+ T T T+ +S +++ S T T
Sbjct: 283 TTTVTSTVTSTTTVPTSTSTVTTAMSTSTSTPSTSTTIESTSTTFTSTASTSTSST-STT 341
Query: 582 NVPISKLPSSPRSTT*GIRLRATSTKRSMTTTS 680
S + SSP STT + T+T +T S
Sbjct: 342 QQSSSTITSSPSSTTLSTSIPTTTTPEITSTLS 374
>U41559-1|AAC24260.1| 373|Caenorhabditis elegans Hypothetical
protein C26B2.8 protein.
Length = 373
Score = 28.3 bits (60), Expect = 5.9
Identities = 38/162 (23%), Positives = 68/162 (41%), Gaps = 11/162 (6%)
Frame = +2
Query: 170 SFEASQVVPDVIPKAPAALLQVKYPSGVEVKEGNELTP---TQVKDEP--SVKWDAEPGQ 334
+F +++VP ++P APA L + S ++ G ++ D P S + + +
Sbjct: 201 TFRENRIVPRLLPVAPAYELIATF-SDEQISMGQLFDADILDKLADPPVMSAGVELQDEK 259
Query: 335 YYTLAMTDPDAPSRKEPTFREWHHWLVGNIQG--NEVNSGETLSQYVGSGPPEKT----G 496
YT+ + D + K T WLV NI ++ V PP+ T G
Sbjct: 260 LYTIILAD---ATSKAVT------WLVANIAAFDGQLEIHRRTKSAVSYQPPDSTDRPVG 310
Query: 497 LHRYVFLLYKQPSKLTFDEPRLTNTSSDKRANFKIAEFAKKY 622
+H + LY+Q T+ + L + D +F E+ ++Y
Sbjct: 311 MHTMILALYEQND--TWTQKDLARIAMD---DFNFTEWLEEY 347
>AY313179-1|AAP79304.1| 782|Caenorhabditis elegans
myotubularin-related protein MTM-6B protein.
Length = 782
Score = 28.3 bits (60), Expect = 5.9
Identities = 25/81 (30%), Positives = 41/81 (50%)
Frame = +3
Query: 474 LDLRKRQACTDTCSSCTNNHRSSHSTSRDSLTLRATNVPISKLPSSPRSTT*GIRLRATS 653
L ++ Q T T ++ TN S S++ D L N+ +S P P S+T I RATS
Sbjct: 648 LKTQQNQQITST-NTPTNMVDSGMSSATDDLK----NLSLSH-PLDPLSSTLPILERATS 701
Query: 654 TKRSMTTTSLFCTSSSVLKYA 716
+ + +SL+ ++ KY+
Sbjct: 702 QESGVMDSSLYYPDEALTKYS 722
>AY313177-1|AAP79302.1| 676|Caenorhabditis elegans
myotubularin-related protein MTM-6A protein.
Length = 676
Score = 28.3 bits (60), Expect = 5.9
Identities = 25/81 (30%), Positives = 41/81 (50%)
Frame = +3
Query: 474 LDLRKRQACTDTCSSCTNNHRSSHSTSRDSLTLRATNVPISKLPSSPRSTT*GIRLRATS 653
L ++ Q T T ++ TN S S++ D L N+ +S P P S+T I RATS
Sbjct: 542 LKTQQNQQITST-NTPTNMVDSGMSSATDDLK----NLSLSH-PLDPLSSTLPILERATS 595
Query: 654 TKRSMTTTSLFCTSSSVLKYA 716
+ + +SL+ ++ KY+
Sbjct: 596 QESGVMDSSLYYPDEALTKYS 616
>Z79639-1|CAB01916.1| 2948|Caenorhabditis elegans Hypothetical protein
F54E4.1 protein.
Length = 2948
Score = 27.9 bits (59), Expect = 7.9
Identities = 13/50 (26%), Positives = 23/50 (46%)
Frame = -1
Query: 622 VLLGELGNFEIGTFVARSVSESRLVECELRWLFVQEEHVSVQACLFRRSR 473
V+ LG+ G + + + EC LR+L ++H + CL + R
Sbjct: 1536 VVQSVLGDNTAGGYATAAAGVETVDECGLRYLMAMKQHEYLMVCLPMKQR 1585
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,724,074
Number of Sequences: 27780
Number of extensions: 409296
Number of successful extensions: 1335
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 1216
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1328
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1718929214
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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