Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte1b06
         (111 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1420.01c ||SPAC56E4.08c|DUF1752 family protein|Schizosacchar...    24   2.3  
SPCC553.10 |||conserved fungal protein|Schizosaccharomyces pombe...    23   5.3  
SPAC1071.05 |||S-adenosylmethionine-dependent methyltransferase ...    23   7.0  
SPBC1718.05 |trs31||TRAPP complex subunit Trs31 |Schizosaccharom...    22   9.3  

>SPAC1420.01c ||SPAC56E4.08c|DUF1752 family
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 580

 Score = 24.2 bits (50), Expect = 2.3
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = +1

Query: 31  IRSHSINPSSFPYRTISD 84
           + S S+N + FP+RT+ D
Sbjct: 374 VDSESVNSADFPHRTVYD 391


>SPCC553.10 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 349

 Score = 23.0 bits (47), Expect = 5.3
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +1

Query: 34  RSHSINPSSFPYRTISDICATSS 102
           +S S  P+ FPY TIS    T++
Sbjct: 185 KSSSYRPTVFPYTTISHYNITNA 207


>SPAC1071.05 |||S-adenosylmethionine-dependent methyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 339

 Score = 22.6 bits (46), Expect = 7.0
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = +2

Query: 8   LTPLSDDPSDLTPLTPAHFLIGRSVIF 88
           L  L DDP+ L  +  +   +GRS+++
Sbjct: 291 LQKLVDDPNSLKAIKTSTQNVGRSIVY 317


>SPBC1718.05 |trs31||TRAPP complex subunit Trs31
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 209

 Score = 22.2 bits (45), Expect = 9.3
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = +1

Query: 37  SHSINPSSFPYRTI 78
           +HS+  S +PYRT+
Sbjct: 179 AHSVPLSQYPYRTV 192


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 484,839
Number of Sequences: 5004
Number of extensions: 5182
Number of successful extensions: 17
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 2,362,478
effective HSP length: 18
effective length of database: 2,272,406
effective search space used: 40903308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)