Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte1b06
         (111 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC093703-4|AAY55885.1|  345|Caenorhabditis elegans Hypothetical ...    28   0.76 
Z80344-8|CAB02490.2| 2268|Caenorhabditis elegans Hypothetical pr...    26   4.1  
AL117203-22|CAB60425.1| 2268|Caenorhabditis elegans Hypothetical...    26   4.1  
Z82272-7|CAB05217.1|  280|Caenorhabditis elegans Hypothetical pr...    25   9.4  

>AC093703-4|AAY55885.1|  345|Caenorhabditis elegans Hypothetical
           protein Y20F4.8 protein.
          Length = 345

 Score = 28.3 bits (60), Expect = 0.76
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = +2

Query: 2   RPLTPLSDDPSDLTPLTPAHFLIGRSVIFAPHPQK 106
           RP+TP   DP D   + PA F+   + +  P   K
Sbjct: 67  RPITPNKKDPDDAPAIRPADFISYNAQLTRPEHHK 101


>Z80344-8|CAB02490.2| 2268|Caenorhabditis elegans Hypothetical protein
            F15D4.7 protein.
          Length = 2268

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +2

Query: 2    RPLTPLSDDPSDLTPLTPAHFL 67
            RPLTP  + P D+  + P  FL
Sbjct: 1957 RPLTPNPNSPDDMIAIRPQDFL 1978


>AL117203-22|CAB60425.1| 2268|Caenorhabditis elegans Hypothetical
            protein F15D4.7 protein.
          Length = 2268

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +2

Query: 2    RPLTPLSDDPSDLTPLTPAHFL 67
            RPLTP  + P D+  + P  FL
Sbjct: 1957 RPLTPNPNSPDDMIAIRPQDFL 1978


>Z82272-7|CAB05217.1|  280|Caenorhabditis elegans Hypothetical
           protein F55G11.10 protein.
          Length = 280

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +1

Query: 37  SHSINPSSFPYRTISDICATSSKK 108
           S S+ P  FP  TI+  C+T+++K
Sbjct: 233 SGSLKPVKFPTGTINLTCSTTARK 256


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,607,583
Number of Sequences: 27780
Number of extensions: 27726
Number of successful extensions: 61
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 61
length of database: 12,740,198
effective HSP length: 18
effective length of database: 12,240,158
effective search space used: 220322844
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)