Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte1b06
         (111 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    20   3.2  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                19   5.6  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    19   7.4  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    19   7.4  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    18   9.8  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    18   9.8  
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             18   9.8  

>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 19.8 bits (39), Expect = 3.2
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = +2

Query: 2   RPLTPLSDDPSDLTPLT 52
           R   PL+ D  DLT LT
Sbjct: 909 RGTNPLAPDAVDLTQLT 925


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 19.0 bits (37), Expect = 5.6
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = +1

Query: 37  SHSINPSSFPYRTISDI 87
           S   +P+S PY T ++I
Sbjct: 123 SSQASPTSIPYATRAEI 139


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 18.6 bits (36), Expect = 7.4
 Identities = 6/8 (75%), Positives = 8/8 (100%)
 Frame = -2

Query: 29  GHPIEELK 6
           G+PIEE+K
Sbjct: 544 GYPIEEIK 551


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 18.6 bits (36), Expect = 7.4
 Identities = 6/8 (75%), Positives = 8/8 (100%)
 Frame = -2

Query: 29  GHPIEELK 6
           G+PIEE+K
Sbjct: 544 GYPIEEIK 551


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 18.2 bits (35), Expect = 9.8
 Identities = 8/13 (61%), Positives = 8/13 (61%)
 Frame = +1

Query: 64  PYRTISDICATSS 102
           P R ISD   TSS
Sbjct: 419 PIRKISDCSTTSS 431


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 18.2 bits (35), Expect = 9.8
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = +2

Query: 68  IGRSVIFAPHPQKK 109
           IGRS I   HP+ K
Sbjct: 194 IGRSFIDYVHPKDK 207


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 18.2 bits (35), Expect = 9.8
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = +2

Query: 68  IGRSVIFAPHPQKK 109
           IGRS I   HP+ K
Sbjct: 189 IGRSFIDYVHPKDK 202


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 30,474
Number of Sequences: 438
Number of extensions: 286
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 17
effective length of database: 138,897
effective search space used:  2639043
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)