Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte1b05
         (582 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC14F5.06 |||iron-sulfur protein|Schizosaccharomyces pombe|chr...    27   1.5  
SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc...    27   2.6  
SPCC320.09 |hem15||ferrochelatase|Schizosaccharomyces pombe|chr ...    26   4.6  
SPAC144.13c |srw1|ste9|CDK inhibitor Srw1|Schizosaccharomyces po...    25   8.1  

>SPBC14F5.06 |||iron-sulfur protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 593

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = -2

Query: 230 CQLCIKKCS*QSTQHVDLLVALISPLMERYAAKS 129
           C +C+KKC   +   ++L   L S +  RY+A S
Sbjct: 58  CGICVKKCPFGAINIINLPTNLESEVTHRYSANS 91


>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
            Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1958

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = -2

Query: 275  ICFHSHYHNLNGAALCQLCIKKCS 204
            +CF SH  + NG   C L +++C+
Sbjct: 1849 LCFQSHCCSFNGIGECNLHMQQCA 1872


>SPCC320.09 |hem15||ferrochelatase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 384

 Score = 25.8 bits (54), Expect = 4.6
 Identities = 11/49 (22%), Positives = 23/49 (46%)
 Frame = -2

Query: 260 HYHNLNGAALCQLCIKKCS*QSTQHVDLLVALISPLMERYAAKSISKKN 114
           H+  + G+ +C++  KKC  +S  H+  +    +P +       + K N
Sbjct: 99  HWTRIQGSEMCKILDKKCP-ESAPHLPFVAFRYAPPLTEDMLDELKKAN 146


>SPAC144.13c |srw1|ste9|CDK inhibitor Srw1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 556

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 9/19 (47%), Positives = 15/19 (78%)
 Frame = +3

Query: 399 DVELNERRPPNSLFSSSNL 455
           D+EL +R PP+S  +SS++
Sbjct: 152 DIELTQRTPPSSSHTSSSI 170


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,163,556
Number of Sequences: 5004
Number of extensions: 39031
Number of successful extensions: 85
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 250133048
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)