Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte1b01
         (701 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1A6.01c ||SPAC23C4.20c|human thyroid receptor interacting pr...    27   2.6  
SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit ...    27   2.6  
SPAC17D4.02 |cdc45|sna41, goa1|DNA replication pre-initiation co...    26   4.5  
SPAC17G8.07 |||YEATS family protein|Schizosaccharomyces pombe|ch...    26   6.0  
SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces p...    26   6.0  
SPCC188.03 |cnd3||condensin subunit Cnd3 |Schizosaccharomyces po...    26   6.0  
SPAC2H10.01 |||transcription factor, zf-fungal binuclear cluster...    26   6.0  

>SPAC1A6.01c ||SPAC23C4.20c|human thyroid receptor interacting
           protein homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 455

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 14/58 (24%), Positives = 31/58 (53%)
 Frame = +1

Query: 145 KEVKKRQQRVLMILDSKNIKYEVIDITEPGRESDKDFMQNNAKSSGGTVSDPNPRSPL 318
           K+ KK+++ + + L  K +  +  + +    + D+D + N  K  G + S  NP++P+
Sbjct: 354 KKEKKKKKVLSISLSGKKVVVDQKEASSESSDEDQDELDNLTKVEGQSHSH-NPKAPV 410


>SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit
           Bgs4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1955

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 15/38 (39%), Positives = 25/38 (65%)
 Frame = +1

Query: 25  GQAYFSDLIVFREDICHFTILKNTLSNMVVKIYISGIS 138
           G  YF+DLI+F  D   + I+ NT+ + V++ ++ GIS
Sbjct: 743 GIMYFTDLILFFLDTYLWYIIFNTIFS-VLRSFVLGIS 779


>SPAC17D4.02 |cdc45|sna41, goa1|DNA replication pre-initiation
           complex subunit Cdc45|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 638

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +1

Query: 334 NDEEYCGDYDQFDLANEVDTLEQFLKL 414
           N E     YD +D  ++VD+LE+ LKL
Sbjct: 455 NQEWLHNFYDAYDALDDVDSLERALKL 481


>SPAC17G8.07 |||YEATS family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 217

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 14/50 (28%), Positives = 21/50 (42%)
 Frame = +1

Query: 193 KNIKYEVIDITEPGRESDKDFMQNNAKSSGGTVSDPNPRSPLPPQMFNDE 342
           ++++YE I   EP   + K   QN      G   +  P  P   Q+  DE
Sbjct: 133 ESVQYEEIVFNEPFEYTYKLLSQNPIGDGHGLAVESEPDHPFSQQLEQDE 182


>SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 647

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +1

Query: 202 KYEVIDITEPGRESDKDFMQNNAKSSGGTVSDPN 303
           KY+  D  E GR   K+ +++ A S   ++ DPN
Sbjct: 522 KYKAEDEAESGRIQAKNHLESYAYSLRNSLDDPN 555


>SPCC188.03 |cnd3||condensin subunit Cnd3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 875

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 12/40 (30%), Positives = 19/40 (47%)
 Frame = +1

Query: 226 EPGRESDKDFMQNNAKSSGGTVSDPNPRSPLPPQMFNDEE 345
           E G  +  +  +N+ +    TVS  +P   LPP   N+ E
Sbjct: 442 EQGNSNAPELNKNDYEGEEITVSQKSPSPSLPPNELNEPE 481


>SPAC2H10.01 |||transcription factor, zf-fungal binuclear cluster
           type|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 480

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = +1

Query: 265 NAKSSGGTVSDPNPRSPLPPQMFNDEEY 348
           NAK S G +       PLPPQ FN  +Y
Sbjct: 394 NAKQSSGKLG------PLPPQSFNSSDY 415


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.310    0.132    0.368 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,016,294
Number of Sequences: 5004
Number of extensions: 36483
Number of successful extensions: 85
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 325165428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)