Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte1a24
         (698 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP23A10.10 |ppk32||serine/threonine protein kinase Ppk32 |Schi...    29   0.85 
SPAC4F8.04 |||Brix domain protein Rpf1|Schizosaccharomyces pombe...    28   1.5  
SPAC1786.03 |cut11|SPAC24C9.01|integral membrane nucleoporin|Sch...    27   2.6  
SPAC1565.07c |||TATA binding protein interacting protein |Schizo...    26   4.5  
SPAC890.02c |alp7|mia1|TACC homolog |Schizosaccharomyces pombe|c...    26   6.0  
SPCC594.05c |||COMPASS complex subunit |Schizosaccharomyces pomb...    25   7.9  
SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster ...    25   7.9  
SPAC57A10.14 |sgf11||SAGA complex subunit Sgf11 |Schizosaccharom...    25   7.9  
SPBC8D2.01 |gsk31||serine/threonine protein kinase Gsk31|Schizos...    25   7.9  

>SPBP23A10.10 |ppk32||serine/threonine protein kinase Ppk32
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 749

 Score = 28.7 bits (61), Expect = 0.85
 Identities = 15/46 (32%), Positives = 28/46 (60%), Gaps = 2/46 (4%)
 Frame = +3

Query: 342 KKAHSKK--RKPFDVLKHRLAGTEAEPFINKLRKTTATPSTTKVNK 473
           +K+H+KK   KP  V+ +R+     +PF ++ ++ T+ PS+   NK
Sbjct: 593 QKSHAKKLQSKPSSVVPNRIT---TDPFSSQTKEATSKPSSISPNK 635


>SPAC4F8.04 |||Brix domain protein Rpf1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 306

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 21/92 (22%), Positives = 40/92 (43%)
 Frame = +3

Query: 312 DRIAKHQEICKKAHSKKRKPFDVLKHRLAGTEAEPFINKLRKTTATPSTTKVNKGKQLNS 491
           ++I + Q+  K  H K +   +  K R    E +P   +LR +   P+T + +K     +
Sbjct: 6   NKIVRQQQYMKALHQKNKDKLERRKERAKEEEKDPEKKRLRLSENIPATIE-SKRVYDET 64

Query: 492 NWRQKHEEFIQAIRAAKQVQAHLNAGGKLSDL 587
               K +E +QA     +  A+ +   K+  L
Sbjct: 65  IIEDKPDEELQAELKDDEFSAYFSEERKVPKL 96


>SPAC1786.03 |cut11|SPAC24C9.01|integral membrane
           nucleoporin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 601

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +3

Query: 414 PFINKLRKTTATPSTTKVNKG 476
           P + K++K  + PSTT VN+G
Sbjct: 422 PLLEKIKKQGSLPSTTPVNEG 442


>SPAC1565.07c |||TATA binding protein interacting protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1220

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 12/42 (28%), Positives = 20/42 (47%)
 Frame = +3

Query: 348 AHSKKRKPFDVLKHRLAGTEAEPFINKLRKTTATPSTTKVNK 473
           A  K +     L   L+ +  +PF+NK   +T  PS  ++ K
Sbjct: 94  AGKKSKNYLSALSLLLSNSNVQPFVNKFYTSTVFPSFLQILK 135


>SPAC890.02c |alp7|mia1|TACC homolog |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 474

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 13/30 (43%), Positives = 15/30 (50%), Gaps = 2/30 (6%)
 Frame = +3

Query: 141 TRGAMQRPANTTPRKPPV--KANSAGSGTP 224
           + G+  R  NT P  PPV  K N   S TP
Sbjct: 177 SNGSFPRQTNTAPLNPPVHLKDNIRNSATP 206


>SPCC594.05c |||COMPASS complex subunit |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 424

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = +3

Query: 126 SETNKTRGAMQRPANTTPRKPPVKANSAGSGTPKG 230
           +ET+     +Q+P  T P+KPPV A+  G    +G
Sbjct: 70  TETDIEMQVIQQP--TIPKKPPVSAHRRGPRKHRG 102


>SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 782

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = +1

Query: 322 LNTRRSAKRPTARRGNPLMYSNIVW 396
           LNT +S   P   + NPL++ ++ W
Sbjct: 678 LNTAQSENLPIYEQENPLLFDSLSW 702


>SPAC57A10.14 |sgf11||SAGA complex subunit Sgf11
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 117

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +3

Query: 279 ACGVCGRHFASDRIAKHQEICK 344
           +C +C R  A+ R A H E CK
Sbjct: 73  SCLMCKREIAASRYAAHLEKCK 94


>SPBC8D2.01 |gsk31||serine/threonine protein kinase
           Gsk31|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 381

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +3

Query: 633 HCNRRFNQGAAERHIPKCANF 695
           HC+R  ++G  ERH+P   NF
Sbjct: 320 HCSR--DEGTIERHLPPLFNF 338


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,437,219
Number of Sequences: 5004
Number of extensions: 42551
Number of successful extensions: 148
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)