Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte1a22
         (208 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces p...    24   2.4  
SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyce...    24   3.2  
SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce...    23   5.5  
SPAC3H1.06c |||membrane transporter |Schizosaccharomyces pombe|c...    23   5.5  
SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pomb...    22   9.6  

>SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2280

 Score = 24.2 bits (50), Expect = 2.4
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = +3

Query: 3    NDVNFLVEIISHKLTSLSIYFIRYLSMYLM*SKQ 104
            ND+   +E+I H+ T L+  FI +   + +  KQ
Sbjct: 1404 NDILDALEVIGHEQTDLNHIFINFTPAFGLAPKQ 1437


>SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2100

 Score = 23.8 bits (49), Expect = 3.2
 Identities = 8/21 (38%), Positives = 15/21 (71%)
 Frame = +2

Query: 59  LFYSLFVNVPNVIKANFTVNF 121
           LF+++F N   + + NFT++F
Sbjct: 333 LFFTIFTNAYKLRQTNFTLDF 353


>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1610

 Score = 23.0 bits (47), Expect = 5.5
 Identities = 8/20 (40%), Positives = 15/20 (75%)
 Frame = +3

Query: 9    VNFLVEIISHKLTSLSIYFI 68
            + FL E +SH+L  L++Y++
Sbjct: 1262 MKFLREKLSHELKELTVYYM 1281


>SPAC3H1.06c |||membrane transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 589

 Score = 23.0 bits (47), Expect = 5.5
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +2

Query: 59  LFYSLFVNVPNVIKANFTVN 118
           L YS   ++PNV + NF  N
Sbjct: 520 LSYSQIASIPNVSEKNFVFN 539


>SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1647

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 7/15 (46%), Positives = 13/15 (86%)
 Frame = +2

Query: 98  KANFTVNFSLLKPYI 142
           ++  TVN+SL++P+I
Sbjct: 385 RSRITVNWSLIRPFI 399


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 412,579
Number of Sequences: 5004
Number of extensions: 4101
Number of successful extensions: 11
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 2,362,478
effective HSP length: 48
effective length of database: 2,122,286
effective search space used: 42445720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)