Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte1a21
         (687 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22F8.11 |plc1||phosphoinositide phospholipase C Plc1|Schizos...    29   0.48 
SPBC21B10.03c |||ataxin-2 homolog|Schizosaccharomyces pombe|chr ...    28   1.5  
SPBC317.01 |mbx2|pvg4|MADS-box transcription factor Pvg4|Schizos...    27   3.4  
SPAC890.02c |alp7|mia1|TACC homolog |Schizosaccharomyces pombe|c...    26   4.4  
SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces ...    26   4.4  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    26   5.9  
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo...    25   7.8  
SPBC83.15 |||ribosome biogenesis protein Nsa1|Schizosaccharomyce...    25   7.8  

>SPAC22F8.11 |plc1||phosphoinositide phospholipase C
           Plc1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 899

 Score = 29.5 bits (63), Expect = 0.48
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +2

Query: 11  N*QTWFSIIWCFLNKLKMFS*SNRSTDPHN 100
           N + WF+II+C  NKLK     + + D HN
Sbjct: 233 NEKRWFTIIYCADNKLKAMHMISPTLDAHN 262


>SPBC21B10.03c |||ataxin-2 homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 791

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 11/32 (34%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = -2

Query: 470 KQHSNQRPPQHR-PHEHSRPVLTPPRDIRIAA 378
           K + +Q+P  H  PH+H +  + PP D  I +
Sbjct: 242 KNNKDQKPKNHEAPHQHPQQKVVPPDDPAIVS 273


>SPBC317.01 |mbx2|pvg4|MADS-box transcription factor
           Pvg4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 372

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 10/22 (45%), Positives = 11/22 (50%)
 Frame = -2

Query: 464 HSNQRPPQHRPHEHSRPVLTPP 399
           H + RPP H PH H      PP
Sbjct: 170 HPHTRPPHHPPHPHFHNNNYPP 191


>SPAC890.02c |alp7|mia1|TACC homolog |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 474

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = -2

Query: 500 HVAWHEQRQVKQHSNQRPPQHRPHEHSRP 414
           H  +HE+RQ     +  PP  R  E S P
Sbjct: 28  HTGFHEKRQGASSESLIPPAQRSSEESMP 56


>SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1364

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
 Frame = -2

Query: 443 QHRPHEHSRPVLTPPRDIRIAAP-TTVLRRTVDRQLDVEHLPSSV 312
           Q  PH HS  +++   D+ IA+P  +     V   L+  H P S+
Sbjct: 169 QSSPHSHSASIISDGSDMDIASPIRSTESDMVSEALNAGHPPPSL 213


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = -2

Query: 485 EQRQVKQHSNQRPPQHRPHEHSRPVLTPP 399
           + R+ ++     PPQ    E +RP L PP
Sbjct: 748 KHRETEEEDEGPPPQPARPESTRPALAPP 776


>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1224

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 4/42 (9%)
 Frame = -1

Query: 678  SSWTPTASA----PLATARGRRRSENETSPSLPYPISHNSCI 565
            S+  P++SA    P+AT+ GR  +   TS  L YP    S I
Sbjct: 1078 STALPSSSAVSRPPIATSAGRSSTAASTSAPLTYPAGDRSHI 1119


>SPBC83.15 |||ribosome biogenesis protein Nsa1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 387

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = -3

Query: 292 SRCMHTAEGGACGRVRQALCTTHGARPAATSDV-TSTCSNI 173
           S C H A     G++R    T HG RP +T DV TS  S++
Sbjct: 220 SLCFHFATITHYGQLR-FYDTKHGRRPVSTFDVSTSPLSHV 259


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,186,473
Number of Sequences: 5004
Number of extensions: 34367
Number of successful extensions: 110
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 110
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)