Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte1a21
(687 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0238 + 1854070-1854344,1854621-1854712,1854852-1855045,185... 36 0.040
01_06_0451 - 29476892-29477516,29477600-29477843,29478313-294787... 36 0.040
10_03_0007 - 6956215-6956223,6957082-6957300,6957874-6957978,695... 32 0.49
05_01_0320 - 2524700-2524810,2525075-2525183,2525607-2525683,252... 30 1.5
10_05_0056 + 8635567-8635782,8636275-8637006,8637088-8637531,863... 29 3.5
10_07_0113 - 12993300-12993413,12993493-12993775,12993856-129940... 29 4.6
04_04_1465 + 33794225-33794389,33794471-33794597,33794669-337947... 29 4.6
02_05_1312 + 35642687-35642923,35643712-35643831,35644468-356445... 28 8.0
01_05_0535 - 23001864-23005052 28 8.0
>03_01_0238 +
1854070-1854344,1854621-1854712,1854852-1855045,
1855529-1855568,1855734-1855815,1856972-1857049,
1857144-1857269,1857544-1857665,1858018-1858057,
1858250-1858324,1858414-1858585
Length = 431
Score = 35.5 bits (78), Expect = 0.040
Identities = 15/33 (45%), Positives = 18/33 (54%)
Frame = -1
Query: 684 RRSSWTPTASAPLATARGRRRSENETSPSLPYP 586
R W + P A ARGRRR+ PSLP+P
Sbjct: 57 RTEEWRIDGNKPAAAARGRRRASLTAMPSLPFP 89
>01_06_0451 -
29476892-29477516,29477600-29477843,29478313-29478714,
29481164-29481358,29481418-29481537,29481615-29481683,
29481901-29481999,29483857-29483946,29484049-29484180,
29485062-29485173
Length = 695
Score = 35.5 bits (78), Expect = 0.040
Identities = 22/57 (38%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Frame = -2
Query: 470 KQHSNQRPPQH-RPHEHSRPVLTPPRDIRIAAPTTVLRRTVDRQLDVEHLPSSVPVG 303
KQHS+ PP H RPH+ S PV++P A T R+ + H P+ PVG
Sbjct: 192 KQHSSNLPPSHHRPHKGSFPVISPTPHKADNASATKHGRS-----GLHHSPAPAPVG 243
>10_03_0007 -
6956215-6956223,6957082-6957300,6957874-6957978,
6958062-6958175,6958342-6958467,6958583-6958697,
6958791-6958867,6958956-6959179,6959848-6959953,
6960065-6960163,6960282-6960467,6960611-6960613
Length = 460
Score = 31.9 bits (69), Expect = 0.49
Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Frame = -2
Query: 482 QRQVKQHSNQRPPQHRPHEHSRPVLTPPRDIRIAAPTTV-LRRTVDRQLDVEHLPSS 315
+R+ +Q R +H H RP+L PRD R + TT + + +++D E+ S
Sbjct: 12 RRRREQQQQGREQRHHHHHRRRPLLLQPRDERCVSCTTFNILAPIYKRMDSENCRES 68
>05_01_0320 -
2524700-2524810,2525075-2525183,2525607-2525683,
2525795-2525873,2526058-2526147,2526779-2526903,
2527288-2527468,2527712-2527905,2528008-2528411,
2528519-2528605,2528802-2529582
Length = 745
Score = 30.3 bits (65), Expect = 1.5
Identities = 22/75 (29%), Positives = 32/75 (42%), Gaps = 1/75 (1%)
Frame = -3
Query: 385 SRPLRLYCAVRSIAN*TSSTCRVRFLWAHASSRCMHTAEGGACGRVRQALCTTHGARPAA 206
SRPLRL R++ + +R L+AH + + R+ LC A AA
Sbjct: 65 SRPLRLIYCTRTVHEMEKTLAELRLLFAHLPAAASRSLLALGLSS-RKNLCVHPQASAAA 123
Query: 205 TSD-VTSTCSNITRS 164
D V + C +T S
Sbjct: 124 ARDSVDTACRRLTAS 138
>10_05_0056 +
8635567-8635782,8636275-8637006,8637088-8637531,
8637618-8637665,8637706-8638505,8638584-8638754,
8638837-8639125,8639211-8639249,8639355-8639393
Length = 925
Score = 29.1 bits (62), Expect = 3.5
Identities = 16/48 (33%), Positives = 20/48 (41%)
Frame = -3
Query: 388 ASRPLRLYCAVRSIAN*TSSTCRVRFLWAHASSRCMHTAEGGACGRVR 245
A P + AV I TS T VR + CM GG C +V+
Sbjct: 450 AENPTSVDSAVDHITEPTSCTLTVRVMPTFMRQECMERNSGGDCAKVQ 497
>10_07_0113 -
12993300-12993413,12993493-12993775,12993856-12994026,
12994104-12994948,12995035-12995307,12995549-12995953
Length = 696
Score = 28.7 bits (61), Expect = 4.6
Identities = 17/49 (34%), Positives = 23/49 (46%)
Frame = -2
Query: 476 QVKQHSNQRPPQHRPHEHSRPVLTPPRDIRIAAPTTVLRRTVDRQLDVE 330
Q +HS + RP SRP LT P ++ P V +R D QL +
Sbjct: 305 QWPKHSIEINITPRPAPSSRPPLTRPHQTVVSLPPAVEQRDEDLQLQYD 353
>04_04_1465 +
33794225-33794389,33794471-33794597,33794669-33794799,
33795153-33795254,33795337-33795420,33795504-33795731,
33795934-33796038,33796376-33796731,33797146-33797303,
33797399-33797505,33797852-33798061
Length = 590
Score = 28.7 bits (61), Expect = 4.6
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = -2
Query: 488 HEQRQVKQHSNQRPPQHRPHEHSRPVLTPPRDIRIAA 378
H +Q+K ++ P+H PH + PV R R A+
Sbjct: 545 HALKQIKGDKREKHPRHVPHAEAAPVDQWDRSFRAAS 581
>02_05_1312 +
35642687-35642923,35643712-35643831,35644468-35644534,
35644673-35644694,35645053-35645152,35645282-35645414,
35645483-35645517,35645708-35646409,35646789-35647121,
35647337-35647601,35647665-35647999,35648105-35648177,
35648271-35648356,35648479-35648598,35648674-35648741,
35648825-35648882
Length = 917
Score = 27.9 bits (59), Expect = 8.0
Identities = 16/41 (39%), Positives = 17/41 (41%)
Frame = -2
Query: 452 RPPQHRPHEHSRPVLTPPRDIRIAAPTTVLRRTVDRQLDVE 330
RPP RP E R V T P +R P D DVE
Sbjct: 42 RPPAMRPEEEGRGVATRPGALRERKPPPNAFNAPDDDEDVE 82
>01_05_0535 - 23001864-23005052
Length = 1062
Score = 27.9 bits (59), Expect = 8.0
Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 5/58 (8%)
Frame = -2
Query: 452 RPPQHRPHEHSRPVLTPPRDIRIAAPTTVLRRTVDRQLD-----VEHLPSSVPVGARV 294
RPP RPH H+ +L R A+P ++ V R L HL +S GAR+
Sbjct: 59 RPPLSRPHPHADVLLRGRRPGCDASPESLHLEVVKRGLTHDLFLANHLVNSYAKGARL 116
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,367,776
Number of Sequences: 37544
Number of extensions: 271718
Number of successful extensions: 1372
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1315
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1363
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1744894544
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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