Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte1a06
         (344 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC119.17 ||SPBC577.01|metallopeptidase|Schizosaccharomyces pom...    26   1.4  
SPAC8E11.05c |||conserved fungal protein|Schizosaccharomyces pom...    25   4.4  
SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1 |Schizo...    25   4.4  
SPBC839.06 |cta3||P-type ATPase, calcium transporting Cta3|Schiz...    24   7.6  

>SPBC119.17 ||SPBC577.01|metallopeptidase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 992

 Score = 26.2 bits (55), Expect = 1.4
 Identities = 13/38 (34%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
 Frame = +1

Query: 226 VNYGR-ALYYSGPRSQTMNCRITKRWSH-KCKINSFLV 333
           +NY + ++ +S    +T NCR+ +RW H   K++ F V
Sbjct: 1   MNYAKLSIAFSKKTIKTHNCRLFQRWLHVGDKVHDFRV 38


>SPAC8E11.05c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 338

 Score = 24.6 bits (51), Expect = 4.4
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = +3

Query: 177 TLKESELSPDSIVIGVSELWEGVVLFRPSVTDDELSH 287
           T++ES L PD I+    +L E  VL RP      + H
Sbjct: 165 TIEESSLDPDRILSLWQKLIEMPVLQRPDWLRSSIRH 201


>SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1336

 Score = 24.6 bits (51), Expect = 4.4
 Identities = 16/41 (39%), Positives = 22/41 (53%)
 Frame = +3

Query: 177 TLKESELSPDSIVIGVSELWEGVVLFRPSVTDDELSHYEAM 299
           TL+  E SP S    VS+  +  +L  P+V DDE  H E +
Sbjct: 45  TLRSQE-SPCSTTFPVSDR-KDALLNIPTVVDDEFQHTEEL 83


>SPBC839.06 |cta3||P-type ATPase, calcium transporting
           Cta3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1037

 Score = 23.8 bits (49), Expect = 7.6
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = +2

Query: 119 CLYCTVSGRESTRC*ATQWNVKGKRTESRLH 211
           C  C +S    T     +W VKG+ TE  LH
Sbjct: 444 CALCNLSTVNQTE--TGEWVVKGEPTEIALH 472


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,274,083
Number of Sequences: 5004
Number of extensions: 21124
Number of successful extensions: 55
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 54
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 102111100
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)