Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte1a06
         (344 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1163 - 31398565-31398654,31398729-31398812,31398893-313990...    42   1e-04
12_02_1022 - 25371291-25371910,25373593-25374046                       27   5.2  
01_01_0275 - 2265650-2265904,2266044-2266204,2266381-2266588,226...    26   9.1  

>04_04_1163 - 31398565-31398654,31398729-31398812,31398893-31399037,
            31399118-31399239,31399338-31399376,31399491-31399601,
            31399682-31399804,31399946-31400032,31400136-31400207,
            31400349-31400621,31400704-31400895,31400988-31401171,
            31401339-31401480,31401578-31401821,31401959-31402603,
            31403024-31403293
          Length = 940

 Score = 41.9 bits (94), Expect = 1e-04
 Identities = 22/93 (23%), Positives = 43/93 (46%)
 Frame = +3

Query: 33   RYKLRPEVNLEAVAEALPDKCTGADLLQXXXXXXXXXXXXXXXKLHNGTLKESELSPDSI 212
            +YKL   V+L ++A+  P   TGAD+                  L     + SE S D +
Sbjct: 843  KYKLHENVSLLSIAQQCPPNFTGADIYALCADAWYHAAKNLAKTLEADPSRTSEASADDV 902

Query: 213  VIGVSELWEGVVLFRPSVTDDELSHYEAMESQM 311
            ++ +++    +    PS++ +EL +YE +  ++
Sbjct: 903  IVEINDFMTVLGDITPSLSIEELQNYEQLRKKI 935


>12_02_1022 - 25371291-25371910,25373593-25374046
          Length = 357

 Score = 26.6 bits (56), Expect = 5.2
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +1

Query: 229 NYGRALYYSGPRSQTMNCRITKRWSHKC 312
           +YGR L  S P   +++ R  +RW+  C
Sbjct: 120 SYGRMLQLSAPHPPSLSPRRRQRWTSTC 147


>01_01_0275 -
           2265650-2265904,2266044-2266204,2266381-2266588,
           2266959-2267112,2267557-2267650,2267814-2267919,
           2268001-2268075,2268336-2268443,2268672-2268725,
           2268818-2268910,2269111-2269206,2269682-2269723
          Length = 481

 Score = 25.8 bits (54), Expect = 9.1
 Identities = 12/47 (25%), Positives = 24/47 (51%)
 Frame = +3

Query: 180 LKESELSPDSIVIGVSELWEGVVLFRPSVTDDELSHYEAMESQM*NK 320
           LK+     D+  +   E +EG +LF+ ++       YE + +++ NK
Sbjct: 112 LKDQVFGFDTFFVTSQEPYEGGILFKGNLRGQPAKSYEKITNRLQNK 158


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,221,579
Number of Sequences: 37544
Number of extensions: 142092
Number of successful extensions: 252
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 250
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 251
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 494158076
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)