Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte1a05
         (559 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC622.09 |htb1||histone H2B |Schizosaccharomyces pombe|chr 3||...   101   7e-23
SPAC1B3.09c |||Noc2p-Noc3p complex subunit Noc2 family |Schizosa...    26   3.3  
SPCC4G3.04c |coq5||C-methytransferase |Schizosaccharomyces pombe...    26   4.3  
SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase Snf22...    25   5.7  
SPCC553.09c |spb70|pol12|DNA polymerase alpha B-subunit|Schizosa...    25   10.0 
SPAC1093.03 |||inositol polyphosphate phosphatase |Schizosacchar...    25   10.0 

>SPCC622.09 |htb1||histone H2B |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 126

 Score =  101 bits (242), Expect = 7e-23
 Identities = 46/88 (52%), Positives = 70/88 (79%)
 Frame = +1

Query: 136 QSFSIYLYKLLRAVTQDNLGISRKSMLIMNNFVNDMLEKIAVEAGRLVAHGKKNTLGSRE 315
           +++S Y+YK+L+ V  D  GIS ++M I+N+FVND+ E+IA EA +L A+ KK+T+ SRE
Sbjct: 35  ETYSSYIYKVLKQVHPDT-GISNQAMRILNSFVNDIFERIATEASKLAAYNKKSTISSRE 93

Query: 316 IQSAVKLLVPGELATHANSEGMKAISMY 399
           IQ+AV+L++PGELA HA +EG K+++ Y
Sbjct: 94  IQTAVRLILPGELAKHAVTEGTKSVTKY 121


>SPAC1B3.09c |||Noc2p-Noc3p complex subunit Noc2 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 528

 Score = 26.2 bits (55), Expect = 3.3
 Identities = 20/72 (27%), Positives = 37/72 (51%), Gaps = 3/72 (4%)
 Frame = -3

Query: 401 WYMLMAFMPSELACVAS--SPGTSNLTADWISLLPRVFFLPWATSLPASTAIFSSISLTK 228
           W  +++F+ ++   ++   SP   NLT D I L+P   + P    L  S  + +    T+
Sbjct: 318 WLHVISFLWNDYESISKEISPIAINLTLDCIRLIPTEQYYPLRLHLLKS--LVNICRSTR 375

Query: 227 LFM-INIDFLEM 195
           L++ ++  FLEM
Sbjct: 376 LYIPLSSQFLEM 387


>SPCC4G3.04c |coq5||C-methytransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 305

 Score = 25.8 bits (54), Expect = 4.3
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +3

Query: 324 CRQVTSTGRAGHTRQLRGHEGHKHVPFEQKERLQK 428
           CR  +++ +   T     H G K VP ++KE L K
Sbjct: 32  CRYTSTSSKDTDTSSHMTHFGFKDVPEDEKEHLVK 66


>SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase
            Snf22|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1680

 Score = 25.4 bits (53), Expect = 5.7
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +3

Query: 267  RKAGRPRQEEYSGQQRNPICRQVTSTGRAG 356
            RK GRPR++  SG   +    Q +S  R+G
Sbjct: 1477 RKRGRPRKKTNSGSSLSTPLSQESSLARSG 1506


>SPCC553.09c |spb70|pol12|DNA polymerase alpha
           B-subunit|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 574

 Score = 24.6 bits (51), Expect = 10.0
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -2

Query: 261 HGDLLQHIVNEVIHDQHRLP 202
           HG+L   +V+ V+H +H  P
Sbjct: 455 HGNLFARLVSHVLHQRHFYP 474


>SPAC1093.03 |||inositol polyphosphate phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 832

 Score = 24.6 bits (51), Expect = 10.0
 Identities = 13/45 (28%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
 Frame = +1

Query: 223 NNFVN-DMLEKIAVEAGRLVAHGKKNTLGSREIQSAVKLLVPGEL 354
           N+FV+    E I++  G    HGK    G + +Q+  +    G+L
Sbjct: 524 NSFVDFQRQEAISLFLGNFTVHGKIVVFGEKRLQALTEKFKNGQL 568


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,902,324
Number of Sequences: 5004
Number of extensions: 33979
Number of successful extensions: 102
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 233995432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)