Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte1a02
         (702 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17G8.07 |||YEATS family protein|Schizosaccharomyces pombe|ch...    39   6e-04
SPBC16D10.06 |||ZIP zinc transporter 2|Schizosaccharomyces pombe...    28   1.5  
SPBC29A3.09c |||AAA family ATPase Gcn20 |Schizosaccharomyces pom...    27   2.6  
SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyce...    27   3.4  
SPCC736.12c |||conserved protein|Schizosaccharomyces pombe|chr 3...    25   7.9  

>SPAC17G8.07 |||YEATS family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 217

 Score = 39.1 bits (87), Expect = 6e-04
 Identities = 14/25 (56%), Positives = 20/25 (80%)
 Frame = +2

Query: 575 WRVWVRGANGRDISAFVHKIVFRLH 649
           WR++V G +G DIS +V K+VF+LH
Sbjct: 41  WRIFVEGVDGEDISKWVRKVVFKLH 65


>SPBC16D10.06 |||ZIP zinc transporter 2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 408

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +3

Query: 111 IVRYVFMSLLRIPKYSREDDLSSRFTVSSDSNRSN 215
           I+R++F++    P   R+DD S+  T   D+N  N
Sbjct: 21  ILRHLFLNKQYSPLVKRDDDSSATVTCGGDANEFN 55


>SPBC29A3.09c |||AAA family ATPase Gcn20 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 736

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +2

Query: 569 LDWRVWVRGANGRDISAFVHKIVFRLHPSSAFV 667
           +D R+ V G NG   S  +  ++ +LHP+S  V
Sbjct: 543 MDSRIGVVGPNGAGKSTMLKLLIEQLHPTSGIV 575


>SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 817

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 16/79 (20%), Positives = 32/79 (40%)
 Frame = +2

Query: 437 NQNNCI*TTMNTLVFSTMKMCVRIWLEVGHACEPRRSALGRALALDWRVWVRGANGRDIS 616
           N +  I +++  L F   K+C+R+W    +  E +++ L   L +            D  
Sbjct: 226 NLDKVIHSSLKKLSFLIFKVCIRLWGSQSYLQE-KKAGLAEVLNISTSQQKPKTTALDYE 284

Query: 617 AFVHKIVFRLHPSSAFVYP 673
            F H++  +    +   YP
Sbjct: 285 VFRHEMATKFSSFADSYYP 303


>SPCC736.12c |||conserved protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 437

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = -3

Query: 628 VNESTDVASIGTTHPHAPVQRQRPAEGGAPRFA 530
           +NES D  S+ TTH   PV     +  G+  F+
Sbjct: 33  LNESGDTRSVWTTHTGEPVASSVLSTSGSNNFS 65


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,054,303
Number of Sequences: 5004
Number of extensions: 65819
Number of successful extensions: 186
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 186
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 325165428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)