Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte1a02
         (702 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0268 + 1989069-1989293,1989938-1990020,1990136-1990357,199...    38   0.010
05_03_0517 - 14936085-14936867                                         30   2.0  
04_04_0016 - 22167780-22167873,22167978-22168272,22168380-221684...    29   2.7  
06_02_0019 - 10656005-10657511,10657712-10658739                       29   3.6  
03_06_0072 - 31469595-31469684,31469762-31469848,31469968-314700...    29   4.7  
01_01_0077 - 585670-585787,585921-586687                               29   4.7  
01_06_0319 - 28441082-28441102,28441630-28441701,28442568-284426...    28   6.2  
01_06_1164 - 35026345-35026954,35027853-35027939,35028120-350284...    28   8.3  

>06_01_0268 +
           1989069-1989293,1989938-1990020,1990136-1990357,
           1990434-1990621,1990711-1990835,1990988-1991039,
           1991585-1991874,1992229-1992307,1992527-1992657
          Length = 464

 Score = 37.5 bits (83), Expect = 0.010
 Identities = 14/27 (51%), Positives = 19/27 (70%)
 Frame = +2

Query: 575 WRVWVRGANGRDISAFVHKIVFRLHPS 655
           W V+VR A   D+S  V ++VF+LHPS
Sbjct: 109 WTVYVRSATNEDLSVIVKRVVFQLHPS 135


>05_03_0517 - 14936085-14936867
          Length = 260

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 16/39 (41%), Positives = 21/39 (53%)
 Frame = -1

Query: 615 LMSRPLAPRTHTRQSNASARPRAERRGSHACPTSSHMRT 499
           L  RP+  R  +  + ASA PR    GS  CP+S  MR+
Sbjct: 126 LQLRPIRTRPPSAAA-ASAEPRRTASGSGTCPSSPRMRS 163


>04_04_0016 -
           22167780-22167873,22167978-22168272,22168380-22168455,
           22168665-22168853,22168955-22169176,22169315-22169413,
           22169502-22169582,22169753-22170060,22171611-22171950,
           22172047-22172110,22172191-22172412,22172865-22173043
          Length = 722

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +2

Query: 554 GRALALDWRVWVRGANGRDISAFVHKI 634
           GR  A+ W VWVR   GR + AF  ++
Sbjct: 158 GRVEAVRWLVWVRLYRGRKVMAFFKRV 184


>06_02_0019 - 10656005-10657511,10657712-10658739
          Length = 844

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = -1

Query: 537 GSHACPTSSHMRTHIFIVENTSVFIVV*IQLF 442
           G++A  +S HMRT IF+     +F+ + + +F
Sbjct: 596 GAYAAGSSQHMRTSIFVFALVLIFVAILLVVF 627


>03_06_0072 -
           31469595-31469684,31469762-31469848,31469968-31470036,
           31470117-31470185,31470269-31471306
          Length = 450

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 16/32 (50%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = -3

Query: 613 DVASIGTTHPHA-PVQRQRPAEGGAPRFARVP 521
           DVA   T  P A PV R +PA   +PR A VP
Sbjct: 187 DVAKAPTAAPAATPVSRTKPAPAPSPRPAHVP 218


>01_01_0077 - 585670-585787,585921-586687
          Length = 294

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = -2

Query: 590 APTRASPTPAPGRGRSAAVRTRAPLLA 510
           AP   S TPAP R + AA    AP +A
Sbjct: 43  APAILSATPAPSRAQEAAAAAAAPCIA 69


>01_06_0319 -
           28441082-28441102,28441630-28441701,28442568-28442627,
           28442918-28443105,28444300-28444327,28444880-28444907,
           28444942-28445163,28445238-28445409,28446224-28447468,
           28447573-28447741,28447820-28448045,28449096-28449451,
           28449530-28449724,28450655-28450864,28451729-28452004
          Length = 1155

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 15/41 (36%), Positives = 20/41 (48%)
 Frame = -2

Query: 578 ASPTPAPGRGRSAAVRTRAPLLAICAHTSSS*KIPAYSLLF 456
           A+PTP  G G  AAV  R+P     A   S+ + P    L+
Sbjct: 2   ATPTPMAGEGTLAAVMPRSPSPTASAAAGSAAEAPMLIFLY 42


>01_06_1164 - 35026345-35026954,35027853-35027939,35028120-35028493,
            35037372-35038586,35038659-35039316,35039331-35041012
          Length = 1541

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -3

Query: 652  GVKAEDDLVNESTDVASIGTTHPHAP 575
            G +  DD  ++ TDVAS+G  H  AP
Sbjct: 1456 GRQCYDDDDDDDTDVASLGAVHARAP 1481


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,830,662
Number of Sequences: 37544
Number of extensions: 440627
Number of successful extensions: 1574
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1515
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1573
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1803843684
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)