Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte1a01
(737 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC965.06 |||potassium channel subunit |Schizosaccharomyces pom... 83 4e-17
SPAC977.14c |||aldo/keto reductase, unknown biological role|Schi... 56 4e-09
SPAC1F7.12 |yak3|yakC, SPAC21E11.01|aldose reductase YakC|Schizo... 56 7e-09
SPBC215.11c |||aldo/keto reductase, unknown biological role|Schi... 40 5e-04
SPAC2F3.05c |||xylose and arabinose reductase |Schizosaccharomyc... 37 0.003
SPAC3A11.11c |||pyridoxal reductase |Schizosaccharomyces pombe|c... 29 0.52
SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces... 26 4.9
SPBC530.11c |||transcription factor |Schizosaccharomyces pombe|c... 26 6.4
SPBC30D10.07c |||biotin-protein ligase |Schizosaccharomyces pomb... 26 6.4
SPBC1347.10 |cdc23|mcm10|MCM-associated protein Mcm10|Schizosacc... 25 8.5
SPBC12C2.04 |||NAD binding dehydrogenase family protein|Schizosa... 25 8.5
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc... 25 8.5
>SPCC965.06 |||potassium channel subunit |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 344
Score = 83.0 bits (196), Expect = 4e-17
Identities = 58/167 (34%), Positives = 88/167 (52%), Gaps = 4/167 (2%)
Frame = +3
Query: 39 QSFNMRYNELGTTGIKVSHISVGSAAFSNIYGKYDEKRSLELIKESLNLGINYLETGPWY 218
Q N+ + LG +G+KVS S+G G YD + + +K++ +LGIN +T Y
Sbjct: 9 QPKNVPFRFLGRSGLKVSAFSLGGWLTYGNEG-YDVEHTKNCLKQAWDLGINTFDTAEIY 67
Query: 219 GQGSSEKVIGKAL--VGVPRDSYYIGSKV--GRYDKDTLKMFDFSAEKTAAGLDNTLSLL 386
G+SE V+GKA+ +G R Y I +KV G K S + GL+ +L L
Sbjct: 68 SNGNSETVMGKAIKELGWDRSEYVITTKVFFGAGTK-LPNTTGLSRKHIIEGLNASLKRL 126
Query: 387 GLDYVDLIQVHDITFAPDTSVVLKETLPVLEQAVRDGKARFIGIADY 527
GL YVD+I H PD SV ++E + Q ++DGKA + G +++
Sbjct: 127 GLPYVDVIMAH----RPDPSVPMEEVVRAFTQLIQDGKAFYWGTSEW 169
>SPAC977.14c |||aldo/keto reductase, unknown biological
role|Schizosaccharomyces pombe|chr 1|||Manual
Length = 351
Score = 56.4 bits (130), Expect = 4e-09
Identities = 65/247 (26%), Positives = 110/247 (44%), Gaps = 32/247 (12%)
Frame = +3
Query: 57 YNELGTTGIKVSHISVGSAAFSNI-----YGKYDEKRSLELIKESLNLGINYLETGPWYG 221
Y LG +G+KVS + +G ++ + DE+ +++K + + GI +T Y
Sbjct: 9 YGCLGNSGLKVSKLILGCMSYGKKEYWEDWVLEDEEEVFKIMKAAYDAGIRTFDTANCYS 68
Query: 222 QGSSEKVIGKAL--VGVPRDSYYIGSK-VGRYDKDTLKMF-DFSAE----------KTAA 359
G SE+++GK + +PR S I SK KD +K+F D S+
Sbjct: 69 AGVSEELVGKFIRKYEIPRSSIVILSKCFFPVRKDLIKIFGDLSSRGVHFLDSPELANQC 128
Query: 360 GL---------DNTLSLLGLDYVDLIQVHDITFAPDTSVVLKETLPVLEQAVRDGKARFI 512
GL ++++ LG Y+D++Q+H D V +E + L V GK R+I
Sbjct: 129 GLSRKHIFDAVEDSVKRLG-TYIDVLQIHRY----DPHVSAEEVMRALNDVVESGKVRYI 183
Query: 513 GIAD---YD-IDLMKXXXXXXXXKISTILSYSKSTLFDNRLQNYISFFKSKGVGVINAAA 680
G + Y I+L K ++ +Y + L+ + I + + GVG+I +
Sbjct: 184 GASTMRCYQFIELQNTAEKHGWHKFISMQNY-HNLLYREEEREMIPYCQKTGVGLIPWSP 242
Query: 681 TGMGLLT 701
GLLT
Sbjct: 243 LARGLLT 249
>SPAC1F7.12 |yak3|yakC, SPAC21E11.01|aldose reductase
YakC|Schizosaccharomyces pombe|chr 1|||Manual
Length = 340
Score = 55.6 bits (128), Expect = 7e-09
Identities = 49/216 (22%), Positives = 99/216 (45%), Gaps = 5/216 (2%)
Frame = +3
Query: 87 VSHISVGSAAFSNIYGKYDEKRSLELIKESLNLGINYLETGPWYGQGSSEKVIGKALVGV 266
V I G +YG E+ + ++ + +LG + ++ YG G++E+ IG+
Sbjct: 13 VPAIGFGCMGLHAMYGPSSEEANQAVLTHAADLGCTFWDSSDMYGFGANEECIGRWFKQT 72
Query: 267 -PRDSYYIGSKVGRYDK--DTLKM-FDFSAEKTAAGLDNTLSLLGLDYVDLIQVHDITFA 434
R ++ +K G Y+K +T ++ + + LD +L LG+D +DL VH F+
Sbjct: 73 GRRKEIFLATKFG-YEKNPETGELSLNNEPDYIEKALDLSLKRLGIDCIDLYYVH--RFS 129
Query: 435 PDTSVVLKETLPVLEQAVRDGKARFIGIADYDIDLMKXXXXXXXXKISTILSYSKSTLFD 614
+T + ++ + L++ V GK R+IG+++ + ++ + + YS +L
Sbjct: 130 GETPI--EKIMGALKKCVEAGKIRYIGLSECSANTIRRAAAVYPVS-AVQVEYSPFSLEI 186
Query: 615 NRLQ-NYISFFKSKGVGVINAAATGMGLLTNKGPQP 719
R + + + + ++ A G G LT P
Sbjct: 187 ERPEIGVMKACRENNITIVCYAPLGRGFLTGAYKSP 222
>SPBC215.11c |||aldo/keto reductase, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 306
Score = 39.5 bits (88), Expect = 5e-04
Identities = 40/191 (20%), Positives = 77/191 (40%), Gaps = 1/191 (0%)
Frame = +3
Query: 141 DEKRSLELIKESLNLGINYLETGPWYGQGSSEKVIGKALVGVPRDSYYIGSKVGRYDKDT 320
D++ + +K L IN+++T YG SE ++ +AL P I +K G
Sbjct: 46 DKEACIATLKRLPELNINFIDTADSYGPEVSENLLREAL--YPYKGLIIATKGGLVRTGP 103
Query: 321 LKMFDFSAEK-TAAGLDNTLSLLGLDYVDLIQVHDITFAPDTSVVLKETLPVLEQAVRDG 497
+ A K + ++ LG+ +DL Q+H I D V K+ + ++G
Sbjct: 104 NEWHPCGAPKFLRQEVLMSMRRLGVKQIDLWQLHRI----DPKVPRKDQFSEIAAMKKEG 159
Query: 498 KARFIGIADYDIDLMKXXXXXXXXKISTILSYSKSTLFDNRLQNYISFFKSKGVGVINAA 677
R +G+++ +D +K + + L + + + + + + KG+ I
Sbjct: 160 LIRHVGLSEVTVDDIKEAEQY----FPVVSVQNLFNLVNRKNEKVLEYCEQKGIAFIPWY 215
Query: 678 ATGMGLLTNKG 710
G L G
Sbjct: 216 PLASGALAKPG 226
>SPAC2F3.05c |||xylose and arabinose reductase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 275
Score = 37.1 bits (82), Expect = 0.003
Identities = 37/137 (27%), Positives = 68/137 (49%), Gaps = 4/137 (2%)
Frame = +3
Query: 129 YGKYDEKRS--LELIKESLNLGINYLETGPWYGQGSSEKVIGKALVGVPRDSYYIGSKVG 302
YG Y R+ + + +L G ++++ Y +E G+A++ ++ G+K
Sbjct: 19 YGSYMVNRTKCFDSVYAALQCGYRHIDSAQMY---HNEADCGRAILKFMEET---GTK-- 70
Query: 303 RYDK-DTLKMFDFSAEK-TAAGLDNTLSLLGLDYVDLIQVHDITFAPDTSVVLKETLPVL 476
R D T K+ D S K T + +D ++ GL Y+DL +H +P + E+ L
Sbjct: 71 REDIWFTSKLNDLSGYKSTLSSIDASVKACGLGYIDLFLLH----SPYGDRI--ESWKAL 124
Query: 477 EQAVRDGKARFIGIADY 527
E+ V +GK R IG++++
Sbjct: 125 EKGVEEGKLRAIGVSNF 141
>SPAC3A11.11c |||pyridoxal reductase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 334
Score = 29.5 bits (63), Expect = 0.52
Identities = 32/158 (20%), Positives = 72/158 (45%), Gaps = 5/158 (3%)
Frame = +3
Query: 87 VSHISVGSAAFSNIYGKYDEKRSLELIKESLNLGINYLETGPWYGQG---SSEKVIGKAL 257
V I +G + + ++ + ++ +L+ G ++ + G +YG ++ +++ +
Sbjct: 9 VGPIGLGLKSLTWTENPVPDEEAFRIMNYALSHGCSFWDAGEFYGLSEPLANLQLLSRYF 68
Query: 258 VGVPR--DSYYIGSKVGRYDKDTLKMFDFSAEKTAAGLDNTLSLLGLDYVDLIQVHDITF 431
P D ++ K G +D +T ++ T + +L + +DL Q I
Sbjct: 69 QKFPDSIDKVFLSVK-GAFDPETHRVHGTRECITKSIKTVRETLKKVKTIDLYQCAAID- 126
Query: 432 APDTSVVLKETLPVLEQAVRDGKARFIGIADYDIDLMK 545
PDT + +ET+ L++ V G R IG+ + ++ +K
Sbjct: 127 -PDTPI--EETMACLKEFVDSGDIRCIGLCEPSVEEIK 161
>SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 513
Score = 26.2 bits (55), Expect = 4.9
Identities = 12/20 (60%), Positives = 12/20 (60%)
Frame = -1
Query: 251 LPNDLFGAALTVPGSGFQIV 192
LPN FGAA PGSG V
Sbjct: 119 LPNVFFGAAAAQPGSGTPFV 138
>SPBC530.11c |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 819
Score = 25.8 bits (54), Expect = 6.4
Identities = 17/49 (34%), Positives = 26/49 (53%)
Frame = -2
Query: 436 GAKVISCTWIRST*SKPSSERVLSRPAAVFSAEKSNIFRVSLS*RPTLL 290
G + C W +S PSS+ +LS+P + S+E+ + LS TLL
Sbjct: 768 GRVIKICDWYQS----PSSDVLLSKPLQLNSSEEMEQQCIDLSRHNTLL 812
>SPBC30D10.07c |||biotin-protein ligase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 631
Score = 25.8 bits (54), Expect = 6.4
Identities = 27/81 (33%), Positives = 38/81 (46%), Gaps = 3/81 (3%)
Frame = +3
Query: 108 SAAFSNIYGKYDEKRSLELIKESLN-LGINYLETGPWYGQGS-SEKVIGKALVGVPR-DS 278
SA S I K DEK LEL+ L LG+ + GQ + +++ + V R
Sbjct: 212 SAEGSPILDKRDEKTRLELLSYILKLLGLKVPKDTSKCGQPTLTDQYLFPNNVETKRFIE 271
Query: 279 YYIGSKVGRYDKDTLKMFDFS 341
+ +KV D+DTL F FS
Sbjct: 272 KALTNKVKNQDEDTLYTFQFS 292
>SPBC1347.10 |cdc23|mcm10|MCM-associated protein
Mcm10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 593
Score = 25.4 bits (53), Expect = 8.5
Identities = 8/11 (72%), Positives = 9/11 (81%)
Frame = -3
Query: 735 HWLDAMAGDLC 703
HWLD AGD+C
Sbjct: 311 HWLDKRAGDVC 321
>SPBC12C2.04 |||NAD binding dehydrogenase family
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 384
Score = 25.4 bits (53), Expect = 8.5
Identities = 12/25 (48%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
Frame = +3
Query: 186 GINY-LETGPWYGQGSSEKVIGKAL 257
GIN+ GPW EKV+GK+L
Sbjct: 23 GINFGTPEGPWNNAQRVEKVLGKSL 47
>SPAC29B12.07 |sec16||multidomain vesicle coat component
Sec16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1995
Score = 25.4 bits (53), Expect = 8.5
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = -2
Query: 439 SGAKVISCTWIRST*SKPSSERVLSRPAAVFS 344
+G++ IS +W+ T S+P + VLS + FS
Sbjct: 1529 AGSEDISSSWLGRTVSRPRLDTVLSSLGSKFS 1560
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,899,502
Number of Sequences: 5004
Number of extensions: 56366
Number of successful extensions: 156
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 349251756
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -