Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte19p24
         (654 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z72516-2|CAA96689.2|  513|Caenorhabditis elegans Hypothetical pr...    29   2.9  
U41541-3|AAK18894.1| 7829|Caenorhabditis elegans Hypothetical pr...    28   6.7  
L23649-2|AAA27911.2|  433|Caenorhabditis elegans Coelomocyte upt...    28   6.7  
AY611497-1|AAT42012.1|  433|Caenorhabditis elegans CUP-4 protein.      28   6.7  

>Z72516-2|CAA96689.2|  513|Caenorhabditis elegans Hypothetical
           protein T25G3.3 protein.
          Length = 513

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 22/53 (41%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
 Frame = +3

Query: 36  ISFHVTALKCAYNRALQIYCI*TKYKTYDGKRHTLLV--YTI*R*NIVSCLSR 188
           + F +T L C Y+ A ++    TK  TYD K HT  V    I R NIV CL +
Sbjct: 207 VDFLMTVLPCKYHYAQELVSHDTKNNTYDYK-HTFCVEIVPICRDNIV-CLPK 257


>U41541-3|AAK18894.1| 7829|Caenorhabditis elegans Hypothetical protein
            C41A3.1 protein.
          Length = 7829

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = -2

Query: 230  LCCSLESAPETQHRARQTTHNISSLNGIHK*CVSFAIIRFILCLN 96
            LC SL  A   Q+     T+ ++SL       + FAII+F+  L+
Sbjct: 2379 LCDSLLDASLLQYDVINETYTVASLKNPQSFAMKFAIIKFLTSLS 2423


>L23649-2|AAA27911.2|  433|Caenorhabditis elegans Coelomocyte uptake
           defective protein4 protein.
          Length = 433

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
 Frame = +3

Query: 438 SRTPEC-KLLGLIFQSSDITLINHKKLFLYS-YKC 536
           S  P C KL+G++  ++ +TL+ H  L   S YKC
Sbjct: 335 SEIPFCIKLIGILMYTNGLTLVLHSSLLCGSYYKC 369


>AY611497-1|AAT42012.1|  433|Caenorhabditis elegans CUP-4 protein.
          Length = 433

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
 Frame = +3

Query: 438 SRTPEC-KLLGLIFQSSDITLINHKKLFLYS-YKC 536
           S  P C KL+G++  ++ +TL+ H  L   S YKC
Sbjct: 335 SEIPFCIKLIGILMYTNGLTLVLHSSLLCGSYYKC 369


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,913,975
Number of Sequences: 27780
Number of extensions: 272133
Number of successful extensions: 546
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 536
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 546
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1455289764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)