Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte19p19
(686 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB1E7.03 |rpc82||DNA-directed RNA polymerase III complex subu... 31 0.21
SPAC16E8.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 30 0.27
SPCC306.03c |cnd2||condensin subunit Cnd2|Schizosaccharomyces po... 28 1.1
SPAC27F1.09c |prp10|sap155|U2 snRNP-associated protein Sap155|Sc... 28 1.5
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 28 1.5
SPAC3C7.12 |tip1|noc1|CLIP170 family protein Tip1|Schizosaccharo... 28 1.5
SPBC36.12c |git7||SGT1-like protein Git7|Schizosaccharomyces pom... 27 2.5
SPAC30C2.04 |||cofactor for methionyl-and glutamyl-tRNA syntheta... 27 3.4
SPAC6G9.04 |mug79||meiotically upregulated gene Mug79|Schizosacc... 27 3.4
SPBC1347.09 |||hexaprenyldihydroxybenzoate methyltransferase|Sch... 27 3.4
SPBC1215.02c |arm1|mdm20|NatB N-acetyltransferase complex non ca... 26 4.4
SPAC4F10.11 |spn1||septin Spn1|Schizosaccharomyces pombe|chr 1||... 26 4.4
SPBC4F6.09 |str1||siderophore-iron transporter Str1 |Schizosacch... 26 4.4
SPCC1235.10c |sec6||exocyst complex subunit Sec6|Schizosaccharom... 26 5.9
SPBC1703.14c |top1||DNA topoisomerase I|Schizosaccharomyces pomb... 25 7.8
SPCC613.12c |raf1|dos1, cmc1, clr8|Rik1-associated factor Raf1|S... 25 7.8
>SPAPB1E7.03 |rpc82||DNA-directed RNA polymerase III complex subunit
Rpc82 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 591
Score = 30.7 bits (66), Expect = 0.21
Identities = 24/80 (30%), Positives = 36/80 (45%)
Frame = +2
Query: 362 DTKYDTELESQRHLLACLLKEFKDANINSMFAIEKAQREDLLKCSDNEKSSVRQRKKKMD 541
D Y L+ H++A L +DA IEKA+R D+ K + Q +K +
Sbjct: 507 DRAYSLLLDELYHVIARLYMRLRDARAQRAQLIEKAERIDI-------KGNEEQYLQKFE 559
Query: 542 KDGLVKMSSGVTEQLLSVSR 601
+ L K+ S + LL SR
Sbjct: 560 QAELKKLYSYEEKLLLQASR 579
>SPAC16E8.08 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 269
Score = 30.3 bits (65), Expect = 0.27
Identities = 42/188 (22%), Positives = 81/188 (43%), Gaps = 4/188 (2%)
Frame = +2
Query: 128 DPYHQSLFAKLENPDVVYQNFVKRLAKYHFQVKAIIQDILECRESMEKLNELNEKGRAKI 307
+P +LF KL N ++ + + L K + + +L+ S+ KL+ L E K+
Sbjct: 22 EPLEANLFGKLHNKLLICKAKKENLEK-KLAYQMMYSKLLK---SLPKLSSLEENKLTKL 77
Query: 308 TEVREELENLYLYGKETGDTKYDTELESQRHLLACLLKEFKDANINSMFAIEKAQREDLL 487
E++EN +E +TEL + L L F ++++ +L
Sbjct: 78 KAPIEDMENTKKELEEIRKQSTETELRYLKSLSNTL--SFGTLSLSNEINKVGPSASFML 135
Query: 488 KCSDNEKSSVRQRKKKMDKDGLVKMSSGVTE----QLLSVSRQLADTTQKSQNTLDNLVS 655
K SV+ +++++K GL++ S +E +L+ + D+ QK + + +
Sbjct: 136 K---EVHDSVQVLEQRLEKMGLIEKPSESSESSIYSILASLKHTNDSLQKKELSPHEIAE 192
Query: 656 SSSPVHGT 679
S S H T
Sbjct: 193 SPSS-HST 199
>SPCC306.03c |cnd2||condensin subunit Cnd2|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 742
Score = 28.3 bits (60), Expect = 1.1
Identities = 14/46 (30%), Positives = 24/46 (52%)
Frame = +2
Query: 515 VRQRKKKMDKDGLVKMSSGVTEQLLSVSRQLADTTQKSQNTLDNLV 652
++ +K ++ V SS E +VSR L+ T +K + LDN +
Sbjct: 438 IQALRKNINNASTVFNSSNTAESSDNVSRSLSSTERKKRRELDNAI 483
>SPAC27F1.09c |prp10|sap155|U2 snRNP-associated protein
Sap155|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1188
Score = 27.9 bits (59), Expect = 1.5
Identities = 34/124 (27%), Positives = 55/124 (44%), Gaps = 8/124 (6%)
Frame = +2
Query: 266 EKLNEL-NEKGRAKITEVREELENLY---LYGKETGDTKY---DTELESQRHLLACLLKE 424
E+LNEL +G A + LE+++ L T DT + + EL ++ L A L E
Sbjct: 282 EELNELLPSEGYAILEPPPGYLESIHPELLQKGTTLDTYHVPQEQELPLEKELPAALPTE 341
Query: 425 FKDANINSMFAIEKAQR-EDLLKCSDNEKSSVRQRKKKMDKDGLVKMSSGVTEQLLSVSR 601
+ F E + LLK D K ++ + +++ L+K+ +G S R
Sbjct: 342 IPGVGDLAFFKQEDVKYFGKLLKVEDEAKLTIAELRERKILRLLLKVKNGTPPMRKSALR 401
Query: 602 QLAD 613
QL D
Sbjct: 402 QLTD 405
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 27.9 bits (59), Expect = 1.5
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Frame = -3
Query: 528 FLCRTDDFSLS-LHFNKSSLCAFSIANILFILASLNSLRRQAKRCLCDSNSVSYF 367
FL D S L+F+++SL + + FI S + ++ K D NS+SYF
Sbjct: 947 FLVEPDFLPASILYFDRASLASTNAYTDPFIPYSTDYTKKNPKEPTADVNSLSYF 1001
>SPAC3C7.12 |tip1|noc1|CLIP170 family protein
Tip1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 461
Score = 27.9 bits (59), Expect = 1.5
Identities = 19/85 (22%), Positives = 36/85 (42%)
Frame = +2
Query: 128 DPYHQSLFAKLENPDVVYQNFVKRLAKYHFQVKAIIQDILECRESMEKLNELNEKGRAKI 307
D Y L L+ D ++L+ Y + + ++ I E ++E+L NE+ ++
Sbjct: 351 DFYISKLEKSLDRNDTTPVPSDEKLSNYAAEKENLVSRISELEHTIEQLTINNERDNERM 410
Query: 308 TEVREELENLYLYGKETGDTKYDTE 382
+ ELE + D+ D E
Sbjct: 411 SPAEFELETTQEVEENDSDSHDDEE 435
>SPBC36.12c |git7||SGT1-like protein Git7|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 27.1 bits (57), Expect = 2.5
Identities = 16/50 (32%), Positives = 27/50 (54%)
Frame = +2
Query: 341 LYGKETGDTKYDTELESQRHLLACLLKEFKDANINSMFAIEKAQREDLLK 490
L K+ DT +S R L LL++++ + I FA++ ++EDL K
Sbjct: 67 LLAKKKSDTGLIGYCQSLRGLAYYLLEQYQSSAICFGFALKHLKKEDLTK 116
>SPAC30C2.04 |||cofactor for methionyl-and glutamyl-tRNA synthetases
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 450
Score = 26.6 bits (56), Expect = 3.4
Identities = 14/47 (29%), Positives = 25/47 (53%)
Frame = +2
Query: 377 TELESQRHLLACLLKEFKDANINSMFAIEKAQREDLLKCSDNEKSSV 517
TEL+ L + E K+ ++S+F Q+ +LL +D EK+ +
Sbjct: 62 TELKFISKYLQISIPETKEGPVSSLFKAVSEQKPELLGNTDFEKAQI 108
>SPAC6G9.04 |mug79||meiotically upregulated gene
Mug79|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1318
Score = 26.6 bits (56), Expect = 3.4
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +2
Query: 401 LLACLLKEFKDANINSMFAIEKAQREDL 484
+L C+LKE+ D + S FA+ A + L
Sbjct: 917 ILECMLKEYYDTFLKSPFAVPNAVQAQL 944
>SPBC1347.09 |||hexaprenyldihydroxybenzoate
methyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 284
Score = 26.6 bits (56), Expect = 3.4
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = +2
Query: 446 SMFAIEKAQREDLLKCSDNEKSSVRQRKKKMDKDGLVKMS 565
S AI K +L+ DN ++S+R K D+D L+ S
Sbjct: 24 STLAISKVISSKILQFEDNSETSLRHDLPKYDQDRLLLTS 63
>SPBC1215.02c |arm1|mdm20|NatB N-acetyltransferase complex non
catalytic subunit Arm1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 811
Score = 26.2 bits (55), Expect = 4.4
Identities = 22/79 (27%), Positives = 40/79 (50%), Gaps = 2/79 (2%)
Frame = +2
Query: 428 KDANINSMF--AIEKAQREDLLKCSDNEKSSVRQRKKKMDKDGLVKMSSGVTEQLLSVSR 601
+D+ +N F A+ A+ ++L C +N+ S K++ + +V M + LLSV
Sbjct: 615 QDSIVNGDFEKAVLSAKEMEVL-CENNDLS------KQLTSEEIVHMKLLIQLGLLSVKV 667
Query: 602 QLADTTQKSQNTLDNLVSS 658
+ D S T++NL+ S
Sbjct: 668 KNGDYENSSFETIENLIES 686
>SPAC4F10.11 |spn1||septin Spn1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 469
Score = 26.2 bits (55), Expect = 4.4
Identities = 17/56 (30%), Positives = 34/56 (60%), Gaps = 1/56 (1%)
Frame = +2
Query: 380 ELESQRHLLACLLKEFKDANINSMFAIEKAQREDLLKCSDNE-KSSVRQRKKKMDK 544
+LE +R L L + +A + ++F+ + ++ED LK S+NE ++ R+ K ++K
Sbjct: 385 KLEEERALHEEKLMKM-EAEMKTIFSQKVQEKEDRLKQSENELRTRHREMKAALEK 439
>SPBC4F6.09 |str1||siderophore-iron transporter Str1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 612
Score = 26.2 bits (55), Expect = 4.4
Identities = 13/29 (44%), Positives = 19/29 (65%)
Frame = +2
Query: 530 KKMDKDGLVKMSSGVTEQLLSVSRQLADT 616
KK+D GL+ M++G+ LLS+S DT
Sbjct: 295 KKLDIIGLILMTAGLALVLLSISLASYDT 323
>SPCC1235.10c |sec6||exocyst complex subunit
Sec6|Schizosaccharomyces pombe|chr 3|||Manual
Length = 730
Score = 25.8 bits (54), Expect = 5.9
Identities = 11/47 (23%), Positives = 23/47 (48%)
Frame = -3
Query: 540 SIFFFLCRTDDFSLSLHFNKSSLCAFSIANILFILASLNSLRRQAKR 400
+I FF T ++ H N S + +++I++I+ S+ + R
Sbjct: 410 TIIFFQMITQQINIISHTNNSDVVGIVLSSIMYIMQSMQDQWKSVMR 456
>SPBC1703.14c |top1||DNA topoisomerase I|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 814
Score = 25.4 bits (53), Expect = 7.8
Identities = 10/43 (23%), Positives = 23/43 (53%)
Frame = +2
Query: 416 LKEFKDANINSMFAIEKAQREDLLKCSDNEKSSVRQRKKKMDK 544
+KEF + MF + +RE+ +K +++Q+K + ++
Sbjct: 273 IKEFSKCDFTQMFHHFEQKREEKKSMPKEQKKAIKQKKDEEEE 315
>SPCC613.12c |raf1|dos1, cmc1, clr8|Rik1-associated factor
Raf1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 638
Score = 25.4 bits (53), Expect = 7.8
Identities = 12/36 (33%), Positives = 22/36 (61%)
Frame = +2
Query: 239 DILECRESMEKLNELNEKGRAKITEVREELENLYLY 346
+ ++ ES KLN++ EK + I+++ NL+LY
Sbjct: 280 ETIQSLESHYKLNQVGEKEYSTISDLCFSKGNLFLY 315
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,738,622
Number of Sequences: 5004
Number of extensions: 55287
Number of successful extensions: 204
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 201
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 204
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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