Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte19p18
         (602 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|ch...    28   0.91 
SPCC1450.07c |||D-amino acid oxidase |Schizosaccharomyces pombe|...    27   1.6  
SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C |Schizosacchar...    27   2.8  
SPCC1840.07c |||phosphoprotein phosphatase |Schizosaccharomyces ...    26   4.9  
SPBC29A10.14 |rec8||meiotic cohesin complex subunit Rec8|Schizos...    25   6.4  
SPAC222.14c |||GTP binding protein Sey1 |Schizosaccharomyces pom...    25   6.4  
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces...    25   8.5  

>SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1208

 Score = 28.3 bits (60), Expect = 0.91
 Identities = 24/94 (25%), Positives = 45/94 (47%), Gaps = 3/94 (3%)
 Frame = +3

Query: 318  SAHNRNST-LDVKINSVDD--LIVLAEAVAYQMMQGNYDRALQSNVATMYSNLKLYGAQL 488
            S++N+ +T L  KI  ++    I++ E  +Y+  Q NY   L  +   +   LK    +L
Sbjct: 952  SSYNKQTTKLQEKIKWLERERSILIDELESYRSNQFNYQNNLVQDKNELEERLKEIQKEL 1011

Query: 489  EVLYKDFLDRYFVVFRNGSQDERLDKKTRLHLLE 590
            EV    F+ +  ++  N + + +L  KT    L+
Sbjct: 1012 EVYNNHFMKQAELMTSNVTDESQLMLKTLREALQ 1045


>SPCC1450.07c |||D-amino acid oxidase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 348

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 16/55 (29%), Positives = 27/55 (49%)
 Frame = -3

Query: 561 QGAHLVSHCGTQQSIYQENLCRGPRVELHIV*DSSTLWQHCFGEHGHNFLASFGM 397
           +GA ++  C      ++ +   G RVEL +V  +S    H +G  G  + A +GM
Sbjct: 283 EGAEIIQECVG----FRPSRKGGARVELDVVPGTSVPLVHDYGASGTGYQAGYGM 333


>SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 988

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 13/49 (26%), Positives = 25/49 (51%)
 Frame = +3

Query: 351 KINSVDDLIVLAEAVAYQMMQGNYDRALQSNVATMYSNLKLYGAQLEVL 497
           K+   + LI+ A+A+          R L+SN+A   +N+K    +++ L
Sbjct: 14  KVEREESLILGAKAMVASTKNPEVKRRLESNIAVSENNIKYLRERIDAL 62


>SPCC1840.07c |||phosphoprotein phosphatase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 332

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = +1

Query: 487 SRSSTKIFLIDTLLCSAMAHKMSAL 561
           SR   +I LIDT LCSA A + + L
Sbjct: 286 SRCEGRILLIDTGLCSAYAGERAVL 310


>SPBC29A10.14 |rec8||meiotic cohesin complex subunit
           Rec8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 561

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = +3

Query: 282 LEVPRPLKSTTSSAHNRNSTLDVKINSVDDLI 377
           L +P PL+S   S HN N    +K   V  L+
Sbjct: 261 LPLPVPLQSVMDSEHNENEPRALKRRKVQKLL 292


>SPAC222.14c |||GTP binding protein Sey1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 762

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 14/60 (23%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
 Frame = +3

Query: 420 YDRALQSNVATMYSNLKLY-GAQLEVLYKDFLDRYFVVFRNGSQDERLDKKTRLHLLELI 596
           Y +  Q  +A++ S+L ++  AQL  L+K+ +  +F        D    + + + + EL+
Sbjct: 349 YQKKKQELIASVDSHLYVFFQAQLNALHKELIKSFFDASNEFPSDTPFKESSSIKINELV 408


>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
 Frame = -3

Query: 258 SLESTWCH-PWRPPPIGTYTSIKSNSAKSESDDNDPRIFNRNN 133
           S  S W +  + PPP      + ++S KS    + P +F RNN
Sbjct: 358 SSRSRWSNISYSPPPPPPPPELLNHSPKSRPLGDKPYLFYRNN 400


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,334,809
Number of Sequences: 5004
Number of extensions: 44988
Number of successful extensions: 141
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 264253462
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)