Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte19p18
         (602 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0137 + 21165151-21165506,21166889-21166986,21167078-211671...    29   3.7  
03_02_0581 - 9617039-9617936,9618057-9618502,9618985-9619071,961...    28   6.5  
03_02_0698 - 10496316-10498127,10498539-10498559                       27   8.7  

>03_05_0137 +
           21165151-21165506,21166889-21166986,21167078-21167143,
           21169401-21169465,21169680-21169721
          Length = 208

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 15/45 (33%), Positives = 18/45 (40%)
 Frame = -3

Query: 249 STWCHPWRPPPIGTYTSIKSNSAKSESDDNDPRIFNRNNSNTCSL 115
           S +  PW PP  G  T+    S  S  +D  P   NR    T  L
Sbjct: 36  SAYLAPWAPPSRGAKTASSGGSGYSPLNDPSPNWSNRPPKETILL 80


>03_02_0581 -
           9617039-9617936,9618057-9618502,9618985-9619071,
           9619276-9619416,9620220-9620411,9620491-9620652,
           9621116-9621199,9621329-9621706
          Length = 795

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = -3

Query: 231 WRPPPIGTYTSIKSNSAKSESDDNDPRIFNRNNSNTCSLPVNV 103
           + P P   Y  +K+ SA  +  DNDP     +++  C LPV V
Sbjct: 651 FHPKPTTDYGMLKTISADLQVRDNDP---ENSSTYVCGLPVAV 690


>03_02_0698 - 10496316-10498127,10498539-10498559
          Length = 610

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 16/48 (33%), Positives = 29/48 (60%)
 Frame = +3

Query: 288 VPRPLKSTTSSAHNRNSTLDVKINSVDDLIVLAEAVAYQMMQGNYDRA 431
           VP P +++T++AH+R+ +   KI++V  L   A  +  QM   N +R+
Sbjct: 539 VPLPREASTATAHSRSMSCPPKIDAVAALSG-ASPLGVQMAAINMERS 585


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,397,198
Number of Sequences: 37544
Number of extensions: 272326
Number of successful extensions: 678
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 665
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 678
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1431112012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)