Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte19p18
         (602 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132877-9|CAC70109.2|  529|Caenorhabditis elegans Hypothetical ...    28   4.5  
AF043698-1|AAB97561.2|   97|Caenorhabditis elegans Hypothetical ...    28   5.9  
Z81104-2|CAB70254.1|  233|Caenorhabditis elegans Hypothetical pr...    27   7.8  

>AL132877-9|CAC70109.2|  529|Caenorhabditis elegans Hypothetical
           protein Y105E8B.3 protein.
          Length = 529

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = -1

Query: 251 SRHGVIHGDRRQLVLIPLLNQIVLKVKVMTMI 156
           +RHGVIHGD  +  LI L ++ ++ +    M+
Sbjct: 220 ARHGVIHGDFNEFNLIMLEDERIVMIDFPQMV 251


>AF043698-1|AAB97561.2|   97|Caenorhabditis elegans Hypothetical
           protein C54G6.3 protein.
          Length = 97

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 4/50 (8%)
 Frame = +1

Query: 451 QCTRILNYMELNSRSSTKIFLIDTLLCS-AMAHKMSALI---RRLDCTFL 588
           +CT+++ Y  LNS     I LI  L+C  A+A  +++ +   + L C FL
Sbjct: 9   ECTKLVGYQFLNSHICLCISLIQLLVCCWAVAQHVNSYMTHSKILKCDFL 58


>Z81104-2|CAB70254.1|  233|Caenorhabditis elegans Hypothetical
           protein M199.4 protein.
          Length = 233

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 21/81 (25%), Positives = 37/81 (45%)
 Frame = +3

Query: 294 RPLKSTTSSAHNRNSTLDVKINSVDDLIVLAEAVAYQMMQGNYDRALQSNVATMYSNLKL 473
           R L++  S ++  N T+  K     DL++  ++   ++ Q      L+  +    +NLKL
Sbjct: 148 RRLETCASISNFGNCTI-TKGTKWTDLVMSIDSFFNELQQSARFSPLKKCIVANPTNLKL 206

Query: 474 YGAQLEVLYKDFLDRYFVVFR 536
           Y A   VL  D+    F+  R
Sbjct: 207 YVANCNVLESDYPQDLFMCGR 227


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,913,392
Number of Sequences: 27780
Number of extensions: 254908
Number of successful extensions: 826
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 796
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 825
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1289949676
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)