Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte19p18
         (602 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    24   1.00 
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               23   3.0  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   4.0  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    21   7.0  

>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 24.2 bits (50), Expect = 1.00
 Identities = 11/25 (44%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
 Frame = +3

Query: 270 TVKKLEV-PRPLKSTTSSAHNRNST 341
           TV+ +E  P+P+    S  HNRN T
Sbjct: 693 TVRFIEAEPQPIGKALSKCHNRNVT 717


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 6/8 (75%), Positives = 6/8 (75%)
 Frame = -3

Query: 246 TWCHPWRP 223
           TW HPW P
Sbjct: 541 TWIHPWLP 548


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = -3

Query: 222 PPIGTYTSIKSNSAKSESDDNDPRIFNRNNSNTCSLPVN 106
           PP    T+  SNS K ESD++D       N ++ +L ++
Sbjct: 213 PPAPRLTN--SNSIKHESDNSDYSHTTDENRHSSTLDID 249


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +2

Query: 215 IGGGRHG*HHVDSNENDPYG 274
           + G R G H +D  +ND YG
Sbjct: 162 VPGVRIGAHILDDCDNDTYG 181


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 156,812
Number of Sequences: 438
Number of extensions: 3574
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17726685
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)