Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte19p11
         (660 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1002.03c |gls2||glucosidase II Gls2|Schizosaccharomyces pomb...    27   3.2  
SPAC17A5.14 |exo2||exonuclease II Exo2 |Schizosaccharomyces pomb...    26   4.2  
SPAC2F7.03c |pom1||DYRK family protein kinase Pom1|Schizosacchar...    26   4.2  
SPAC23H3.11c |||glucosidase |Schizosaccharomyces pombe|chr 1|||M...    25   7.3  
SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor ...    25   7.3  
SPBC725.01 |||aspartate aminotransferase|Schizosaccharomyces pom...    25   9.7  
SPBC660.10 |||translation elongation factor G|Schizosaccharomyce...    25   9.7  

>SPAC1002.03c |gls2||glucosidase II Gls2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 923

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 20/55 (36%), Positives = 29/55 (52%)
 Frame = +1

Query: 445 FMIKGGGFPAIRRAMLERGWVEKYESHKVRHPPTNVDPKKASGKELSKVERMILY 609
           F  K G +  IR    E G +   +SH   +PP  V PK +S ++  KVER+ +Y
Sbjct: 835 FNYKKGEY-LIRHFSYENGILTMKDSHS--NPP--VSPKYSSSQKHLKVERINIY 884


>SPAC17A5.14 |exo2||exonuclease II Exo2 |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1328

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 15/47 (31%), Positives = 24/47 (51%)
 Frame = +1

Query: 223  WN*RKVYQTPSSTKRVRLKKDLRPSSAISFSKSDHGPETTSSTEQLR 363
            WN R+ +  P S  +V   + L   S   FSK +H   +T+ T+ +R
Sbjct: 1252 WNKREHHPKPFSLHQVPPPESLIHKSKSKFSKGNH--HSTNGTQSIR 1296


>SPAC2F7.03c |pom1||DYRK family protein kinase
           Pom1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1087

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +3

Query: 165 TRSQKFQKREGRTRSMAVMMELEESVSDSKLHKESTAK 278
           ++SQK   +EGR+        L  S S S++ K S AK
Sbjct: 415 SKSQKSSNKEGRSSRGGFFSRLSFSRSSSRMKKGSKAK 452


>SPAC23H3.11c |||glucosidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 629

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 9/33 (27%), Positives = 17/33 (51%)
 Frame = -1

Query: 519 FIFFYPASFKHGPTDCWETAAFNHENLTLFHRC 421
           +I  +P ++K+     WE A +     +L H+C
Sbjct: 595 YIEEHPLAYKNPNATTWEMAGYTWPKNSLMHKC 627


>SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor
           Ste6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 911

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = +1

Query: 520 SHKVRHPPTNVDPKKASGKELSK 588
           SH + HP T    K   GKELS+
Sbjct: 616 SHLLHHPSTKRSHKMLEGKELSQ 638


>SPBC725.01 |||aspartate aminotransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 437

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = +1

Query: 523 HKVRHPPTNVDPKKASGKELSK 588
           H   H PT VDP KA   ++ K
Sbjct: 215 HACAHNPTGVDPTKAQWDDILK 236


>SPBC660.10 |||translation elongation factor G|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 813

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -2

Query: 449 MKTLRCFIAVSAIFFNSFHLSLLTQ 375
           +  L+ F  +S+   N F LSLLTQ
Sbjct: 623 LTNLQSFCTISSFLSNDFPLSLLTQ 647


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,688,746
Number of Sequences: 5004
Number of extensions: 54699
Number of successful extensions: 144
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 299817502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)