Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte19p11
         (660 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AK023960-1|BAB14741.1|  744|Homo sapiens protein ( Homo sapiens ...    44   6e-04
AL022327-3|CAI42686.1|  747|Homo sapiens protein ( Human DNA seq...    40   0.006
BC033892-1|AAH33892.1|  257|Homo sapiens transmembrane protein 5...    31   4.8  

>AK023960-1|BAB14741.1|  744|Homo sapiens protein ( Homo sapiens
           cDNA FLJ13898 fis, clone THYRO1001738, weakly similar to
           TUBULIN--TYROSINE LIGASE (EC 6.3.2.25). ).
          Length = 744

 Score = 43.6 bits (98), Expect = 6e-04
 Identities = 25/58 (43%), Positives = 33/58 (56%)
 Frame = +1

Query: 391 RWNELKKIAETAMKQRKVFMIKGGGFPAIRRAMLERGWVEKYESHKVRHPPTNVDPKK 564
           R    K   E A+KQ+K+F I+G  +P IR  +  RGWVEK   H  R  PT + P+K
Sbjct: 3   RLRNAKIYVERAVKQKKIFTIQGC-YPVIRCLLRRRGWVEKKMVH--RSGPTLLPPQK 57


>AL022327-3|CAI42686.1|  747|Homo sapiens protein ( Human DNA
           sequence from clone RP3-355C18 on chromosome 22q13.3
           Contains a novel gene, a novel gene, the MLC1 gene for
           megalencephalic leukoencnovel protein (FLJ41993)).
          Length = 747

 Score = 40.3 bits (90), Expect = 0.006
 Identities = 16/42 (38%), Positives = 29/42 (69%)
 Frame = +1

Query: 388 ERWNELKKIAETAMKQRKVFMIKGGGFPAIRRAMLERGWVEK 513
           +R+   +++ E A+K++K+F I G  +P +R A+  +GWVEK
Sbjct: 14  DRYKIARQLTEKAIKEKKIFSIYGH-YPVVRAALRRKGWVEK 54


>BC033892-1|AAH33892.1|  257|Homo sapiens transmembrane protein 55A
           protein.
          Length = 257

 Score = 30.7 bits (66), Expect = 4.8
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = -1

Query: 576 FARRFFRIYVCWRMTYLMGFIFFYPASF 493
           FARRF   YV W + YL+G I    A +
Sbjct: 216 FARRFRATYVSWAIAYLLGLICLIRACY 243


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 90,841,159
Number of Sequences: 237096
Number of extensions: 1898797
Number of successful extensions: 3460
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3375
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3458
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7422585720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)