Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte19p11
         (660 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF003140-10|AAD47121.2|  419|Caenorhabditis elegans Hypothetical...    30   1.7  
AF003136-10|AAK21378.2| 1281|Caenorhabditis elegans High inciden...    30   1.7  
Z48582-1|CAA88465.1|  490|Caenorhabditis elegans Hypothetical pr...    29   2.9  
AF017746-1|AAD01632.1| 1198|Caenorhabditis elegans ladder protei...    29   3.9  
Z67884-1|CAA91807.1|  347|Caenorhabditis elegans Hypothetical pr...    28   5.1  
AC024200-10|AAF35999.1|  284|Caenorhabditis elegans Hypothetical...    28   5.1  
Z79604-4|CAB60456.1|  598|Caenorhabditis elegans Hypothetical pr...    27   8.9  

>AF003140-10|AAD47121.2|  419|Caenorhabditis elegans Hypothetical
           protein C44E4.3 protein.
          Length = 419

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 16/30 (53%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
 Frame = +1

Query: 523 HKVRHPPTNVDPKKASGKELSKV--ERMIL 606
           H   H PT VDP K   K+LS+V  ER IL
Sbjct: 199 HACAHNPTGVDPTKEQWKKLSQVLKERKIL 228


>AF003136-10|AAK21378.2| 1281|Caenorhabditis elegans High incidence of
            males (increasedx chromosome loss) protein 1, isoform a
            protein.
          Length = 1281

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 19/71 (26%), Positives = 35/71 (49%), Gaps = 4/71 (5%)
 Frame = +1

Query: 232  RKVYQTPSSTKRV-RLKKDLRPSSAISFSKSDHGPETTSSTEQLRQYKSWVSNE---RWN 399
            RKV        ++ R  KD++     + +      E+    +++ + K  +S++    WN
Sbjct: 847  RKVEVEKEKVSQIDRQYKDMKKKEKTAAAALKEHTESMEQDKEVLEEKKALSHKLETEWN 906

Query: 400  ELKKIAETAMK 432
            E+KKIA+ AMK
Sbjct: 907  EVKKIAQVAMK 917


>Z48582-1|CAA88465.1|  490|Caenorhabditis elegans Hypothetical
           protein F27E5.3 protein.
          Length = 490

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 14/30 (46%), Positives = 19/30 (63%)
 Frame = +1

Query: 256 STKRVRLKKDLRPSSAISFSKSDHGPETTS 345
           S ++ ++K DL P +AISFSK      TTS
Sbjct: 265 SPEKKKMKDDLAPPAAISFSKLSPSTVTTS 294


>AF017746-1|AAD01632.1| 1198|Caenorhabditis elegans ladder protein
            protein.
          Length = 1198

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +1

Query: 352  EQLRQYKSWVSNERWNELKKIAETAMK 432
            E+ R+Y  W++ E+ NELK++     K
Sbjct: 1057 EKARKYLDWINEEQLNELKRLKSEGKK 1083


>Z67884-1|CAA91807.1|  347|Caenorhabditis elegans Hypothetical
           protein T14G8.2 protein.
          Length = 347

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 17/56 (30%), Positives = 28/56 (50%)
 Frame = +1

Query: 403 LKKIAETAMKQRKVFMIKGGGFPAIRRAMLERGWVEKYESHKVRHPPTNVDPKKAS 570
           L+ +A     +  VFM K  G PA+    +E G++      KV     +VDP+K++
Sbjct: 270 LQGVAAIEWTENNVFMEKFKGIPAMTNYFIETGYIIWDSKGKV--ATVHVDPEKST 323


>AC024200-10|AAF35999.1|  284|Caenorhabditis elegans Hypothetical
           protein Y71F9AL.7 protein.
          Length = 284

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = -1

Query: 567 RFFRIYVCWRMTYLMGFIFFYP 502
           RFF +Y+ W   + + FI  +P
Sbjct: 240 RFFEVYILWPSFFFLSFIILFP 261


>Z79604-4|CAB60456.1|  598|Caenorhabditis elegans Hypothetical
           protein ZK662.5 protein.
          Length = 598

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -3

Query: 256 SLESDTLSSNSIITAMDLVLPSRF*NFCDRV 164
           S++ +  +S +I  A  L L  RF  FCDR+
Sbjct: 282 SIDEEGWNSTAIFLAQCLALHDRFIKFCDRI 312


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,576,247
Number of Sequences: 27780
Number of extensions: 293957
Number of successful extensions: 791
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 765
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 791
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1476380920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)