Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte19p03
         (612 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   1.8  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          22   5.4  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      22   5.4  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    21   7.2  
AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       21   7.2  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   7.2  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   7.2  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    21   9.5  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = -3

Query: 202 NDVFIAISLILGLNIFRSATSDFEQ*FCP*ILNKL*LHENTV 77
           N VF +I+ +L LN+  +    F+  F P  L  L +H N +
Sbjct: 542 NGVFTSIASLLLLNLSENHIEWFDYAFIPGNLKWLDIHGNFI 583


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = -2

Query: 203 QRRFYSHFPYIGLKYFSICN 144
           QR  +S  PY   KY ++ N
Sbjct: 311 QRNRFSSLPYYKYKYLNVIN 330


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = -2

Query: 203 QRRFYSHFPYIGLKYFSICN 144
           QR  +S  PY   KY ++ N
Sbjct: 311 QRNRFSSLPYYKYKYLNVIN 330


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = -1

Query: 393 FWSTTDNYFRIDTAIYKNRNVSSISNVY 310
           F S T N  ++  A+Y N+N   +S+ +
Sbjct: 169 FGSWTFNGDQVSLALYNNKNFVDLSDYW 196


>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 7/27 (25%), Positives = 15/27 (55%)
 Frame = -1

Query: 396 WFWSTTDNYFRIDTAIYKNRNVSSISN 316
           W+W   ++ ++ID  I K   + + +N
Sbjct: 282 WYWIDRNSAYKIDQRIQKGLFLFACTN 308


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 8/28 (28%), Positives = 15/28 (53%)
 Frame = +1

Query: 394  PPKKTWFTLTNIPKSHHHFHWLVKFTRL 477
            P K T+F  T++ +   +  W+   TR+
Sbjct: 1268 PAKNTYFEATDLQQHVEYQFWVTGSTRV 1295


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 8/28 (28%), Positives = 15/28 (53%)
 Frame = +1

Query: 394  PPKKTWFTLTNIPKSHHHFHWLVKFTRL 477
            P K T+F  T++ +   +  W+   TR+
Sbjct: 1264 PAKNTYFEATDLQQHVEYQFWVTGSTRV 1291


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 21.0 bits (42), Expect = 9.5
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = -1

Query: 432 WNIR*CEPRLFRWFWSTTDNYFRIDTAIYKNRNVSSISN 316
           W+ R  E R+     + T   F I T IY+N+N    S+
Sbjct: 616 WHTRSTEKRVS----AGTPAAFNISTTIYENQNCLDASS 650


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 154,779
Number of Sequences: 438
Number of extensions: 3266
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18093444
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)