Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte19o18
(595 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1114 + 30995816-30996229,30997054-30997129,30997493-309975... 100 1e-21
08_01_0901 - 8873905-8874076,8874674-8874786,8875388-8875522,887... 31 0.92
11_06_0291 + 22008412-22012284 30 1.2
07_03_0943 - 22778877-22780970,22781376-22781480,22781481-227820... 29 2.1
04_04_0012 + 22145111-22146388 28 4.9
03_05_0106 + 20880069-20881001 28 4.9
09_01_0017 + 383921-384250,384407-384478,385490-385654,385737-38... 28 6.5
05_03_0355 - 12885898-12886290,12886351-12886644,12886744-128868... 28 6.5
12_02_1222 + 27145264-27148287 27 8.5
04_03_0665 - 18506221-18506271,18506331-18506401,18507097-185071... 27 8.5
04_03_0201 - 12586324-12587131,12590080-12591512 27 8.5
>04_04_1114 +
30995816-30996229,30997054-30997129,30997493-30997587,
30997729-30997812,30998094-30998181,30998485-30998609,
30998687-30998785,31000089-31000190,31001570-31001680
Length = 397
Score = 100 bits (239), Expect = 1e-21
Identities = 52/106 (49%), Positives = 71/106 (66%), Gaps = 7/106 (6%)
Frame = +1
Query: 298 MKTQMELLIMRIQAEFCRALEKEEDKEAKFTVDRWTRKEGGGGITCVLQDGRVFEKAGVN 477
++ + E +I R+Q E C ALE+ + A+F D W+R GGGGI+ VLQDGRVFEKAGVN
Sbjct: 35 VRERFEAMIRRVQGEVCAALEEADGSGARFVEDVWSRPGGGGGISRVLQDGRVFEKAGVN 94
Query: 478 ISVVSGKLPPAAIQQMRSR-GKNLQNAE------LPFFAAGVSAVI 594
+SVV G +PP A + + GKN A+ +PFFAAG+S+V+
Sbjct: 95 VSVVYGVMPPDAYRAAKGEAGKNGAAADGPKAGPVPFFAAGISSVL 140
>08_01_0901 -
8873905-8874076,8874674-8874786,8875388-8875522,
8875661-8875792,8876136-8876301,8877154-8877248,
8878983-8879104,8879283-8879403,8879556-8879633,
8879730-8879991,8880196-8880366,8881070-8881710
Length = 735
Score = 30.7 bits (66), Expect = 0.92
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = +1
Query: 367 EDKEAKFTVDRWTRKEGGGG 426
ED+E ++ VDRW +E GGG
Sbjct: 168 EDEEVRWLVDRWLAEEDGGG 187
>11_06_0291 + 22008412-22012284
Length = 1290
Score = 30.3 bits (65), Expect = 1.2
Identities = 12/35 (34%), Positives = 23/35 (65%)
Frame = +1
Query: 322 IMRIQAEFCRALEKEEDKEAKFTVDRWTRKEGGGG 426
IM+I + + +E +E+ + +V++ T K+GGGG
Sbjct: 374 IMKIARKLKKHMEADEELNEQISVEKRTTKQGGGG 408
>07_03_0943 -
22778877-22780970,22781376-22781480,22781481-22782059,
22782149-22782187,22782340-22782372
Length = 949
Score = 29.5 bits (63), Expect = 2.1
Identities = 11/26 (42%), Positives = 19/26 (73%)
Frame = +3
Query: 486 CLRETSSSCHSADAEQRQESTKRRAP 563
CL + ++SC+ +EQR++ST+ R P
Sbjct: 770 CLPDINASCNGLLSEQRRQSTRSRPP 795
>04_04_0012 + 22145111-22146388
Length = 425
Score = 28.3 bits (60), Expect = 4.9
Identities = 13/43 (30%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
Frame = -1
Query: 559 ALRFVDSCLCSASAEWQLEEVSRRQL--IYSLLLSQRLCRLVE 437
+L++ ++ L ++ + + + R L +Y LL Q LCRL+E
Sbjct: 300 SLKYFETALRDYKSQLEEDPIVHRHLSSLYDTLLEQNLCRLIE 342
>03_05_0106 + 20880069-20881001
Length = 310
Score = 28.3 bits (60), Expect = 4.9
Identities = 13/43 (30%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
Frame = -1
Query: 559 ALRFVDSCLCSASAEWQLEEVSRRQL--IYSLLLSQRLCRLVE 437
+L++ ++ L ++ + + + R L +Y LL Q LCRL+E
Sbjct: 185 SLKYFETALRDYKSQLEEDPIVHRHLSSLYDALLEQNLCRLIE 227
>09_01_0017 +
383921-384250,384407-384478,385490-385654,385737-385784,
385863-385940,386425-386538,386661-386753,387779-387890,
388959-389005,389116-389478
Length = 473
Score = 27.9 bits (59), Expect = 6.5
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = +1
Query: 133 KNRPLRLYCAAVLGTGIVAYNQYQSKAKMK 222
+ LR++CA VLGT IV +Y +A K
Sbjct: 350 RKHQLRVHCAEVLGTPIVGDYKYGRQAHQK 379
>05_03_0355 -
12885898-12886290,12886351-12886644,12886744-12886871,
12886952-12888482
Length = 781
Score = 27.9 bits (59), Expect = 6.5
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Frame = +1
Query: 10 RFMIVNDSGIF--FYF*FLEKMSFNILFRSFQTLSYVGTYKKIKNR 141
RF + DSG FY K+ F + Q LS+ G ++++KNR
Sbjct: 282 RFKLKKDSGPSKQFYLGTGHKVQIKFHFGAGQLLSWAGQHERVKNR 327
>12_02_1222 + 27145264-27148287
Length = 1007
Score = 27.5 bits (58), Expect = 8.5
Identities = 13/33 (39%), Positives = 16/33 (48%)
Frame = +1
Query: 415 GGGGITCVLQDGRVFEKAGVNISVVSGKLPPAA 513
GGGG+T V +G V V+ G LP A
Sbjct: 69 GGGGVTAVAVEGLGVAATSVPFDVLCGSLPSLA 101
>04_03_0665 -
18506221-18506271,18506331-18506401,18507097-18507169,
18507476-18507805
Length = 174
Score = 27.5 bits (58), Expect = 8.5
Identities = 12/40 (30%), Positives = 19/40 (47%)
Frame = +3
Query: 366 GRQGSKVYSRQMDP*RRRWWNHLCSTRRQSL*ESRSEYIS 485
GR+G+ V M WW H C +R + E R + ++
Sbjct: 76 GRRGAPVQGSHMSAEVEGWWEHWCISRGFAGGEQRQQSVT 115
>04_03_0201 - 12586324-12587131,12590080-12591512
Length = 746
Score = 27.5 bits (58), Expect = 8.5
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = -3
Query: 512 AAGGSFPETTDIFTPAFSKTLPSCRTQVIPPPPS 411
A G F + + FS TLP+ T PPPPS
Sbjct: 269 ATGDQFASNHTVLSFTFSSTLPTRTTN--PPPPS 300
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,365,746
Number of Sequences: 37544
Number of extensions: 301487
Number of successful extensions: 1032
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 995
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1030
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1411925004
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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