Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte19o17
         (440 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    27   1.7  
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    25   3.9  
SPBC31E1.02c |pmr1||P-type ATPase, calcium transporting Pmr1 |Sc...    25   6.8  
SPAC31A2.06 |||conserved fungal protein|Schizosaccharomyces pomb...    25   6.8  
SPBC428.07 |meu6||meiotic chromosome segregation protein Meu6|Sc...    24   9.0  
SPAC6F6.13c |||DUF726 family protein|Schizosaccharomyces pombe|c...    24   9.0  

>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 3655

 Score = 26.6 bits (56), Expect = 1.7
 Identities = 9/28 (32%), Positives = 14/28 (50%)
 Frame = +1

Query: 79   FDLECNCRIYENGLFFLLLKVFCNKHDE 162
            FDL   C+ Y+    F    ++C + DE
Sbjct: 2341 FDLNQRCQFYKKPKLFSCFSIYCREFDE 2368


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 25.4 bits (53), Expect = 3.9
 Identities = 15/38 (39%), Positives = 23/38 (60%)
 Frame = -1

Query: 161  SSCLLQKTFSNRKNNPFS*ILQLHSKSKRKLWYHYISN 48
            SS +L+ TF  R ++P   +LQ+  KS    W HYI++
Sbjct: 4560 SSDILRTTFI-RSSSPCYPLLQIVLKSFECPWEHYITD 4596


>SPBC31E1.02c |pmr1||P-type ATPase, calcium transporting Pmr1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 899

 Score = 24.6 bits (51), Expect = 6.8
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = -2

Query: 367 IGKWFRKRKHLCRFKS 320
           I KW+R+RK L R KS
Sbjct: 877 IRKWYRRRKGLVRTKS 892


>SPAC31A2.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 542

 Score = 24.6 bits (51), Expect = 6.8
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = +3

Query: 18  LFPNFKHYKLIRNIVIPKFAFRFRMQLQNL*KRIIFSVTESFL 146
           LFP   H+  +    IPK A  F   + NL K+  ++   SF+
Sbjct: 67  LFPKKAHFDAVALPPIPKGAPNFLADVLNLLKKKYYATDLSFV 109


>SPBC428.07 |meu6||meiotic chromosome segregation protein
           Meu6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 651

 Score = 24.2 bits (50), Expect = 9.0
 Identities = 18/80 (22%), Positives = 35/80 (43%)
 Frame = +2

Query: 200 VPKTTAVVPLCSGARSAASEAQARNGPRQSASFTLNLFRGRFEPTQVFPFPEPLSDDQRQ 379
           +P T    P  +   + ASE +   GP + ++ T N+ +   +     P  + ++D   +
Sbjct: 381 IPTTEEHFPATTEEVAPASEEKPATGPAEESTSTQNVEQASTQNDNGTPIGQ-IADAIEE 439

Query: 380 MLQELVPPVEKFFQEXNDPA 439
            ++     VE+ F E  D A
Sbjct: 440 DVKGTAQSVEQAFIEETDIA 459


>SPAC6F6.13c |||DUF726 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 778

 Score = 24.2 bits (50), Expect = 9.0
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +2

Query: 344 PFPEPLSDDQRQMLQEL 394
           P PEPL + Q Q+L E+
Sbjct: 704 PIPEPLRERQSQLLYEI 720


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,777,401
Number of Sequences: 5004
Number of extensions: 35101
Number of successful extensions: 76
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 76
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 160149590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)