Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte19o17
(440 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0432 + 3339235-3339915,3340313-3340561,3341071-3341139,334... 30 0.95
12_01_0737 - 6588612-6588922,6595261-6596602,6596639-6596749 29 1.7
01_06_1151 + 34937738-34937855,34937959-34939244 29 1.7
10_08_0208 + 15841024-15841134,15841171-15841713 28 2.9
02_04_0496 + 23446039-23446964,23452755-23452845,23452946-234529... 28 2.9
01_05_0320 - 20874691-20875230,20879337-20879590,20880014-208810... 28 3.8
01_06_0693 - 31280108-31281271 27 5.1
06_03_1490 + 30497980-30498102,30499034-30500156,30500914-305011... 27 6.7
03_06_0444 - 33979319-33980044 27 6.7
06_03_0986 - 26574083-26574952 27 8.8
06_01_0847 - 6451525-6451678,6452870-6453066,6454300-6454591,645... 27 8.8
02_05_0450 - 29117826-29118212,29118307-29118733,29119158-291192... 27 8.8
>03_01_0432 +
3339235-3339915,3340313-3340561,3341071-3341139,
3341292-3341414,3341526-3341738
Length = 444
Score = 29.9 bits (64), Expect = 0.95
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -1
Query: 290 HSVSVRFELAPLMRQIELRCKAEPPQSFW 204
HS + RF +APL+R+ R + P S W
Sbjct: 104 HSYAARFAIAPLLRRTVTRAWYDHPASLW 132
>12_01_0737 - 6588612-6588922,6595261-6596602,6596639-6596749
Length = 587
Score = 29.1 bits (62), Expect = 1.7
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = -3
Query: 348 KGNTCVGSNRPRKRFRVKEALCLGPFRACASDAAD 244
K +TCV S +PRK + EA L P SD +
Sbjct: 181 KCHTCVQSKQPRKPHKASEARNLAPLELVHSDLCE 215
>01_06_1151 + 34937738-34937855,34937959-34939244
Length = 467
Score = 29.1 bits (62), Expect = 1.7
Identities = 15/37 (40%), Positives = 21/37 (56%)
Frame = -3
Query: 261 ASDAADRAPLQSGTTAVVLGTRQRPPHRTSLAPFIVF 151
AS +D S T++V G ++PP RTS AP+ F
Sbjct: 64 ASVFSDDPDTLSRTSSVAYGGGEQPPVRTSSAPYAAF 100
>10_08_0208 + 15841024-15841134,15841171-15841713
Length = 217
Score = 28.3 bits (60), Expect = 2.9
Identities = 15/35 (42%), Positives = 18/35 (51%)
Frame = -3
Query: 348 KGNTCVGSNRPRKRFRVKEALCLGPFRACASDAAD 244
K +TCV S +PRK R EA L P SD +
Sbjct: 179 KFHTCVQSKQPRKPHREFEARNLAPLELIHSDLCE 213
>02_04_0496 +
23446039-23446964,23452755-23452845,23452946-23452996,
23453080-23453206,23453390-23453425,23453443-23453473,
23453488-23453576,23454341-23454462,23455601-23455778,
23458343-23458470,23458592-23458658,23459167-23459272,
23459365-23459473,23459965-23460084,23460187-23460220,
23460471-23460547,23460640-23460692,23460847-23460898,
23461270-23461767
Length = 964
Score = 28.3 bits (60), Expect = 2.9
Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Frame = +1
Query: 64 YQSLRFDLE-CNCRIYENGLFFLLLKVFCNKHDERCQAGPVWRSLPRPQND 213
Y + RF +E CN Y++ L + F + DE Q WR L P+N+
Sbjct: 622 YCAKRFHIELCNHEDYDSNLSNAMRSAFYSM-DEDLQLSDAWRELVIPRNN 671
>01_05_0320 -
20874691-20875230,20879337-20879590,20880014-20881087,
20881259-20881511,20881548-20882369
Length = 980
Score = 27.9 bits (59), Expect = 3.8
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = -3
Query: 339 TCVGSNRPRKRFRVKEALCLGPFRACASDAAD 244
TCV S +PRK + EA L P SD +
Sbjct: 364 TCVQSKQPRKPHKASEARNLAPLELVHSDLCE 395
>01_06_0693 - 31280108-31281271
Length = 387
Score = 27.5 bits (58), Expect = 5.1
Identities = 18/54 (33%), Positives = 27/54 (50%)
Frame = +2
Query: 242 RSAASEAQARNGPRQSASFTLNLFRGRFEPTQVFPFPEPLSDDQRQMLQELVPP 403
R++A A + A FT L RG + + + + +S RQML+E VPP
Sbjct: 163 RASADPAARPSADTYHALFTALLSRGGGDTMVHYMYMDTVSALFRQMLEEGVPP 216
>06_03_1490 +
30497980-30498102,30499034-30500156,30500914-30501132,
30501228-30501454,30501810-30501884,30502250-30502321,
30502765-30502863,30502975-30503046,30503131-30503245,
30503455-30503523,30503625-30503952,30504320-30504437,
30504522-30505448
Length = 1188
Score = 27.1 bits (57), Expect = 6.7
Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Frame = -2
Query: 235 AAKRNHR-SRFGDEAATATQDQLGTFHRVYYKKLSVTEKIIRFHK 104
AAK + R + GD A+ + D+ TF + KKL + I++ K
Sbjct: 618 AAKYDERCKKVGDVASKLSMDE-ATFREIQEKKLEIYNAIVKLQK 661
>03_06_0444 - 33979319-33980044
Length = 241
Score = 27.1 bits (57), Expect = 6.7
Identities = 11/17 (64%), Positives = 13/17 (76%)
Frame = +3
Query: 219 WFRFAAELDLPHQRRKL 269
W RFAAE+ PH RR+L
Sbjct: 90 WGRFAAEIRDPHLRRRL 106
>06_03_0986 - 26574083-26574952
Length = 289
Score = 26.6 bits (56), Expect = 8.8
Identities = 16/45 (35%), Positives = 22/45 (48%)
Frame = +2
Query: 215 AVVPLCSGARSAASEAQARNGPRQSASFTLNLFRGRFEPTQVFPF 349
A+V SG +AA+EA P ASF + GRF +F +
Sbjct: 12 ALVLPASGDDAAAAEAAPPPAPAGGASFNVTEILGRFPEFGLFSY 56
>06_01_0847 -
6451525-6451678,6452870-6453066,6454300-6454591,
6454622-6454654,6454869-6455102,6455204-6455259,
6455552-6456754
Length = 722
Score = 26.6 bits (56), Expect = 8.8
Identities = 10/43 (23%), Positives = 22/43 (51%)
Frame = -2
Query: 202 DEAATATQDQLGTFHRVYYKKLSVTEKIIRFHKFCNCILNRNA 74
DE+ + D+L T R + +++ ++ + +F +C L A
Sbjct: 345 DESGSGKIDELATIVRKMRESITLKDRFYKMRRFSSCFLGSEA 387
>02_05_0450 -
29117826-29118212,29118307-29118733,29119158-29119296,
29119426-29119530,29119624-29119705
Length = 379
Score = 26.6 bits (56), Expect = 8.8
Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Frame = +2
Query: 164 GAKLVLCGGRCLVPKTTAVVPLCSGARSAASEAQA-RNGPRQSASFTLNLFRGR 322
G KLV+ R LV K + CS S+ S AQA P ++ + +RGR
Sbjct: 29 GGKLVMMQRRDLVTKGVTLSVCCSMLSSSNSSAQALERLPFKADGYNFWTWRGR 82
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,722,888
Number of Sequences: 37544
Number of extensions: 240717
Number of successful extensions: 750
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 732
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 750
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 835800280
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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