Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte19o15
         (569 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC16A10.02 |||transcription coactivator Sub1 |Schizosaccharomy...    72   7e-14
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc...    26   3.4  
SPCC338.18 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    26   4.5  
SPAC17G8.13c |mst2||histone acetyltransferase Mst2|Schizosacchar...    25   5.9  
SPAPB1E7.01c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    25   7.8  
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    25   7.8  

>SPAC16A10.02 |||transcription coactivator Sub1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 136

 Score = 71.7 bits (168), Expect = 7e-14
 Identities = 34/85 (40%), Positives = 53/85 (62%), Gaps = 2/85 (2%)
 Frame = +1

Query: 274 ISRNPPAEKKAKMADRTNDKEPTWVLQG--KKLLKVREFKGKVYVDIREFYEKNGELLPG 447
           I+    A  K    ++ +D E  W L    KK + + EF+G  YV IRE+YEK+G++LPG
Sbjct: 7   IASGDKASSKKPKTEKQSDHELHWALNETEKKRITLSEFRGTRYVHIREYYEKDGDMLPG 66

Query: 448 KKGISLTPEQWRKLLSVGEEVNETV 522
           KKGI+L   +W+KL  +  EV++++
Sbjct: 67  KKGIALNINEWKKLKQLIHEVDDSL 91


>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
            Prp11|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1014

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 19/69 (27%), Positives = 27/69 (39%), Gaps = 1/69 (1%)
 Frame = +1

Query: 262  QPIKISRNPPAEKKAKMADRTNDKEPTW-VLQGKKLLKVREFKGKVYVDIREFYEKNGEL 438
            QPI I +    E KAKM      ++  W V     ++ V E  G        FY      
Sbjct: 902  QPISIIKTDGDEYKAKMEINDYPQQARWAVTNNTNIVHVTELTGTSITTKGNFYLPGKNP 961

Query: 439  LPGKKGISL 465
             PG++ + L
Sbjct: 962  EPGEEKLYL 970


>SPCC338.18 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 117

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -3

Query: 450 FTW*KFTILFIKFSYVYIYFSFEFS 376
           + W K   +F+KFS + + FS  FS
Sbjct: 49  YQWFKHQSVFLKFSLIVLLFSLMFS 73


>SPAC17G8.13c |mst2||histone acetyltransferase
           Mst2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 407

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = -2

Query: 331 YH*SCLPFLPFFQQEGSSIFLL 266
           Y+ SC+  LP +Q+ G  +FL+
Sbjct: 236 YNVSCILTLPIYQRRGYGVFLI 257


>SPAPB1E7.01c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 163

 Score = 25.0 bits (52), Expect = 7.8
 Identities = 21/71 (29%), Positives = 31/71 (43%)
 Frame = +1

Query: 313 ADRTNDKEPTWVLQGKKLLKVREFKGKVYVDIREFYEKNGELLPGKKGISLTPEQWRKLL 492
           A R +  E +WV    + LK      K  ++ +   +K  E + G K         RKL 
Sbjct: 58  ASRKDQSENSWVTSKNEKLKSLPPALKKKIERQLQKKKEAEKIEGGKNHDNLK---RKLN 114

Query: 493 SVGEEVNETVS 525
            VG+E+NE  S
Sbjct: 115 KVGDELNEQQS 125


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 25.0 bits (52), Expect = 7.8
 Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
 Frame = -1

Query: 521 TVSLTSSPTDNNFLHCSGVRLI---PFLPGKSSPFFS*NSLMSTYTFPLNSRTFSN 363
           T S +  P+ +  +  S   ++   P     SSP  S +SL+STY+  L++ T S+
Sbjct: 665 TYSSSVIPSSSTLVSSSSSLIVSSSPVASSSSSPIPSSSSLVSTYSASLSNITHSS 720


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,096,121
Number of Sequences: 5004
Number of extensions: 41464
Number of successful extensions: 113
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 242064240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)