Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte19o11
         (628 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1198.08 |||dipeptidase Dug1 |Schizosaccharomyces pombe|chr 2...   156   3e-39
SPAC24C9.08 |||vacuolar carboxypeptidase |Schizosaccharomyces po...    37   0.003
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    31   0.14 
SPBC3B9.16c |nup120||nucleoporin Nup120|Schizosaccharomyces pomb...    28   0.96 
SPBC19C7.08c |||leucine carboxyl methyltransferase|Schizosacchar...    26   3.9  
SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|...    25   6.8  
SPBC16D10.05 |mok13||alpha-1,3-glucan synthase Mok13|Schizosacch...    25   6.8  
SPAC222.13c |||6-phosphofructo-2-kinase |Schizosaccharomyces pom...    25   6.8  
SPBC17A3.01c |tim50|SPBC8D2.21c|TIM23 translocase complex subuni...    25   6.8  
SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual      25   9.0  
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    25   9.0  
SPBC609.02 |ptn1||phosphatidylinositol-3,4,5-trisphosphate3-phos...    25   9.0  

>SPBC1198.08 |||dipeptidase Dug1 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 474

 Score =  156 bits (378), Expect = 3e-39
 Identities = 71/164 (43%), Positives = 101/164 (61%), Gaps = 1/164 (0%)
 Frame = +2

Query: 140 TLPEIFKYVDQNKDSYKQLLKEAVAIPSVSCDVKYRADCIRMVHWMQDKLKEVGATTELR 319
           +L ++++ +D+ KD +   L  AV+IPSVS DV  R   + M  ++  +  ++GA  E R
Sbjct: 2   SLDKLYEVIDKKKDEFVTRLSRAVSIPSVSADVTLRPKVVEMADFVVSEFTKLGAKMEKR 61

Query: 320 DVGFQTIDGKDVQXXXXXXXXXXNDPKKNTVCIYGHLDVQPALKSDGWETEPFEL-VERN 496
           D+G+  +DG+DV           NDP K TV IY H DVQPA   DGW T+PF L V+  
Sbjct: 62  DIGYHQMDGQDVPLPPIVLGQYGNDPSKKTVLIYNHFDVQPASLEDGWSTDPFTLTVDNK 121

Query: 497 EKLYGRGSTDDKGPVLGWLHTINAYKGTGAELPVNLKFIFECME 628
            +++GRG+TDDKGP++GW+  I A+K  G + PVNL   FE ME
Sbjct: 122 GRMFGRGATDDKGPLIGWISAIEAHKELGIDFPVNLLMCFEGME 165


>SPAC24C9.08 |||vacuolar carboxypeptidase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 596

 Score = 36.7 bits (81), Expect = 0.003
 Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
 Frame = +2

Query: 416 IYGHLDVQPALKS--DGWETEPFELVERNEKLYGRGSTDDKGPVLGWLHTI 562
           + GH DV P  ++  D W   PF     N  +Y RG+ DDK  V+  L  +
Sbjct: 194 LMGHQDVVPVNQASLDRWYFPPFSATYHNGHVYSRGAADDKNSVVAILEAL 244


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 31.1 bits (67), Expect = 0.14
 Identities = 39/145 (26%), Positives = 64/145 (44%), Gaps = 3/145 (2%)
 Frame = -2

Query: 627 SIHSKMNFKLTGSSAPVPL*ALMVCSQPSTGPLSSVEPLPYNFSLRSTSSKGSVSHPSDF 448
           S+ S  +   + SS+ +   +L   S PST   SS      + SL S+SS  + S  S  
Sbjct: 214 SVVSSSSSPSSSSSSTLTSSSLSTSSIPSTSSSSSST----SSSLSSSSSSSTASSSSSS 269

Query: 447 NAGCTSK*P*IQTVFFFGSLPNTPTKTGGS*TSLPSIV*KPTSLNSVVAPTSFNLSCIQ* 268
           ++  +S            S  ++PT T  + +S  S    PTS +S ++ +S + S    
Sbjct: 270 SSIISSS----------SSSSSSPTSTSSTISSSSSSSSSPTSTSSTISSSSSSSSSFSS 319

Query: 267 TI---RMQSARYFTSHETDGMATAS 202
           T+    M S+  F+S  T   +T S
Sbjct: 320 TLSSSSMSSSSSFSSSPTSSSSTIS 344


>SPBC3B9.16c |nup120||nucleoporin Nup120|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1136

 Score = 28.3 bits (60), Expect = 0.96
 Identities = 22/93 (23%), Positives = 40/93 (43%), Gaps = 1/93 (1%)
 Frame = +2

Query: 2    INRATCIFNTLIKLPATKQLVPFFPAYHQHYSVSSKQVSAKMATE-KTLPEIFKYVDQNK 178
            ++   C  NT+  L +    + FF A +     S  Q+S   AT   +L  IF   D   
Sbjct: 750  VDSTNCNLNTMEALASVNTALQFFSALNYSECFSESQISPLHATVISSLSAIFIRDDTEN 809

Query: 179  DSYKQLLKEAVAIPSVSCDVKYRADCIRMVHWM 277
            D   +L+++           +Y A C++++ W+
Sbjct: 810  DLVTELVEKLFLFK------QYNA-CMQLIGWL 835


>SPBC19C7.08c |||leucine carboxyl
           methyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 681

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -3

Query: 443 QVVHPNDHRYKLYFFLDHYPIR 378
           ++V P D   + YFFL HY I+
Sbjct: 295 EMVEPFDEWEEFYFFLQHYSIQ 316


>SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 743

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = +3

Query: 432 MYNLH*NLMDGRLNLLN*LSAMKNYMEEVLLM 527
           +YN + N    RLN      A+KNYMEE+ L+
Sbjct: 435 LYNFNGNANPSRLN-----PALKNYMEELKLL 461


>SPBC16D10.05 |mok13||alpha-1,3-glucan synthase
           Mok13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2358

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -3

Query: 500 FHCAQLVQKVQSPIHQISMQVVHPNDHR 417
           FH +  +  +   IH+I +Q VH  DH+
Sbjct: 796 FHWSGDLINIADGIHEIKLQRVHSQDHQ 823


>SPAC222.13c |||6-phosphofructo-2-kinase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 592

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = -2

Query: 513 LPYNFSLRSTSSKGSVSHPSDFNAGCTSK*P*IQTVFFF 397
           L Y   L ST+ + S+S  S FN   + +   I+T+ FF
Sbjct: 406 LRYTNDLASTNKRFSLSEASSFNVWSSVRKRAIETIEFF 444


>SPBC17A3.01c |tim50|SPBC8D2.21c|TIM23 translocase complex subunit
           Tim50 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 452

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 14/37 (37%), Positives = 17/37 (45%)
 Frame = +2

Query: 395 PKKNTVCIYGHLDVQPALKSDGWETEPFELVERNEKL 505
           P    + I    DV+P LKS   +  P E   R EKL
Sbjct: 311 PLLEFIAIMDIKDVRPVLKSYQGKNIPLEYARREEKL 347


>SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1202

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 14/48 (29%), Positives = 24/48 (50%)
 Frame = -3

Query: 458 HQISMQVVHPNDHRYKLYFFLDHYPIRLLKLAAVERLCHLLFESQHPL 315
           H+I+M +V       ++ F   +   R + L  +E L   +F+S HPL
Sbjct: 381 HEINMLLVDLLLEPLQVAFVYKNLARRWISLEEIENLWLKVFDSSHPL 428


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -1

Query: 469  SLPSIRFQCRLYIQMTIDTNCIFFW 395
            SLPS+R  C+LY  ++I +   F W
Sbjct: 4083 SLPSVRLACQLY-GVSIQSLVFFTW 4106


>SPBC609.02 |ptn1||phosphatidylinositol-3,4,
           5-trisphosphate3-phosphatase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 348

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 15/33 (45%), Positives = 18/33 (54%)
 Frame = -3

Query: 407 YFFLDHYPIRLLKLAAVERLCHLLFESQHPLTL 309
           Y F DH P  LL L A+      LF++Q  LTL
Sbjct: 93  YGFQDHNPPPLLFLWAIVMNMDALFQTQPLLTL 125


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,747,719
Number of Sequences: 5004
Number of extensions: 57861
Number of successful extensions: 187
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 186
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 277683324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)