Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte19o08
         (528 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13G1.10c |mug81||ATP-dependent RNA helicase Slh1|Schizosacch...    30   0.19 
SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1 |Schizosacch...    27   1.3  
SPBC887.12 |||P-type ATPase |Schizosaccharomyces pombe|chr 2|||M...    25   5.3  
SPBC557.05 |||arrestin|Schizosaccharomyces pombe|chr 2|||Manual        25   9.2  
SPAC11E3.11c |||guanyl-nucleotide exchange factor |Schizosacchar...    25   9.2  

>SPBC13G1.10c |mug81||ATP-dependent RNA helicase
            Slh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1935

 Score = 30.3 bits (65), Expect = 0.19
 Identities = 10/22 (45%), Positives = 18/22 (81%)
 Frame = -1

Query: 456  MTGSFDYSLRYLNNSKIFWIFL 391
            +T +F++ +RY  NS++FWIF+
Sbjct: 1011 ITPNFNWDMRYHGNSQMFWIFV 1032


>SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 297

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 4/48 (8%)
 Frame = +3

Query: 204 NPCAKPACCSNE-YWCYTRHRPTSTLQE---TTTLRRRDCLYQWRRNC 335
           +P  KP+CCS E   C +  +P+   QE     +  +  C  Q +++C
Sbjct: 232 SPSEKPSCCSQEKKSCCSSKKPSCCSQEKKGCCSTEKTSCCSQEKKSC 279


>SPBC887.12 |||P-type ATPase |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1258

 Score = 25.4 bits (53), Expect = 5.3
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -1

Query: 510  FFLWLPNYKFHSYNIFICMTGSFDY 436
            F+ W+ N  +HS  +F+C    F Y
Sbjct: 1049 FWSWITNGFYHSLLLFLCSIAVFYY 1073


>SPBC557.05 |||arrestin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 433

 Score = 24.6 bits (51), Expect = 9.2
 Identities = 7/20 (35%), Positives = 14/20 (70%)
 Frame = -1

Query: 513 LFFLWLPNYKFHSYNIFICM 454
           +F + +  +KFHS  +F+C+
Sbjct: 85  VFIIGICKHKFHSSTVFLCL 104


>SPAC11E3.11c |||guanyl-nucleotide exchange factor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 942

 Score = 24.6 bits (51), Expect = 9.2
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +1

Query: 370 NLSQSKSQKDPKDLGVIQISQGIIKGT 450
           NL+      DPKDL + ++ + +IK T
Sbjct: 720 NLNTPNLSYDPKDLDISKVGKPVIKTT 746


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,678,447
Number of Sequences: 5004
Number of extensions: 27868
Number of successful extensions: 78
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 78
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 216376042
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)