Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte19o08
         (528 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_58276| Best HMM Match : MIB_HERC2 (HMM E-Value=8.3e-33)             29   3.1  
SB_27584| Best HMM Match : F5_F8_type_C (HMM E-Value=0)                27   7.2  

>SB_58276| Best HMM Match : MIB_HERC2 (HMM E-Value=8.3e-33)
          Length = 2822

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +3

Query: 294 LRRRDCLYQWRRNCLVPI 347
           +R RDCLY W  +C + +
Sbjct: 686 VRNRDCLYMWNESCAIEL 703


>SB_27584| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
          Length = 7381

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = +1

Query: 67   LKLIKMVRLSIILNRIPVIKFRKGGASHV 153
            ++L +  R   +LN  PV  FRKGG  HV
Sbjct: 7327 IRLTEKNRKRYVLNVKPVQDFRKGGRKHV 7355


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,177,780
Number of Sequences: 59808
Number of extensions: 214750
Number of successful extensions: 520
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 477
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 520
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1197191618
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)