Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte19o04
         (657 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.                24   1.1  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     23   1.9  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    23   3.4  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    22   4.5  

>AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.
          Length = 316

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = -1

Query: 546 VLSSSGCAVITSHNASFLCATITARNLLI 460
           +L S  CA+   HNA  + A +  +N+L+
Sbjct: 160 ILKSITCALQFCHNAGIVHADVKPKNILM 188


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 12/26 (46%), Positives = 13/26 (50%)
 Frame = +2

Query: 563 DALKKFVKEGKNIQLTEKVDPSIMGR 640
           DAL K  KE     LT + DP   GR
Sbjct: 100 DALPKLFKEWGTTNLTFEEDPEPFGR 125


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = -3

Query: 202 FNTKYWYWRLFSESNGTHESSKNAGHDINKQICNL*NKKN 83
           +N  Y+Y    S+SNG++ S+ +     NK+     N+KN
Sbjct: 138 YNDNYFY----SKSNGSNSSNSDVLFKQNKEEEQTINRKN 173


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 7/21 (33%), Positives = 13/21 (61%)
 Frame = -3

Query: 214 YIPPFNTKYWYWRLFSESNGT 152
           YIP     ++YWR+++ +  T
Sbjct: 257 YIPMLVMLFFYWRIYNAAVST 277


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 185,374
Number of Sequences: 438
Number of extensions: 4090
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19734030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)