Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte19o02
         (599 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U97193-13|AAO38676.1|  215|Caenorhabditis elegans Hypothetical p...    29   2.5  
U97193-12|AAB52441.1|  283|Caenorhabditis elegans Hypothetical p...    29   2.5  
AF026212-1|AAF99971.1|  807|Caenorhabditis elegans Hypothetical ...    29   3.3  
AL034393-10|CAA22323.1|  228|Caenorhabditis elegans Hypothetical...    28   4.4  
AF036688-3|AAB88317.1|  161|Caenorhabditis elegans Hypothetical ...    27   7.7  

>U97193-13|AAO38676.1|  215|Caenorhabditis elegans Hypothetical
           protein C06A5.8b protein.
          Length = 215

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 18/47 (38%), Positives = 26/47 (55%)
 Frame = -2

Query: 346 SSSLYRNRAAALAKTTVGPTPHTSPLQLNHFAIVSK*ESQISQCAEK 206
           SSSL R     L++       HT  LQ++H AI +K E++ + C EK
Sbjct: 164 SSSLVRGFQIGLSRLFRNRRIHTEHLQVDHGAIATKLETR-AACTEK 209


>U97193-12|AAB52441.1|  283|Caenorhabditis elegans Hypothetical
           protein C06A5.8a protein.
          Length = 283

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 18/47 (38%), Positives = 26/47 (55%)
 Frame = -2

Query: 346 SSSLYRNRAAALAKTTVGPTPHTSPLQLNHFAIVSK*ESQISQCAEK 206
           SSSL R     L++       HT  LQ++H AI +K E++ + C EK
Sbjct: 232 SSSLVRGFQIGLSRLFRNRRIHTEHLQVDHGAIATKLETR-AACTEK 277


>AF026212-1|AAF99971.1|  807|Caenorhabditis elegans Hypothetical
           protein F52G3.3 protein.
          Length = 807

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = +2

Query: 518 ARNDNSGSTRQSAFGYCGPRSFDEV 592
           ARN  + +TR  A   CGP SFDE+
Sbjct: 147 ARNLQAIATRLLAMNMCGPTSFDEL 171


>AL034393-10|CAA22323.1|  228|Caenorhabditis elegans Hypothetical
           protein Y18D10A.12 protein.
          Length = 228

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = +2

Query: 284 GGRAHGGLRECRGPVSVQRARGDYIHGRRPRS 379
           GGR+ GG +      S   +  DY HGR P S
Sbjct: 20  GGRSRGGYKSYSSFSSSSSSEEDYHHGRPPHS 51


>AF036688-3|AAB88317.1|  161|Caenorhabditis elegans Hypothetical
           protein C24D10.6 protein.
          Length = 161

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 16/51 (31%), Positives = 24/51 (47%)
 Frame = +2

Query: 443 PPLGLLYEILPILSGHVNQR*SKHAARNDNSGSTRQSAFGYCGPRSFDEVP 595
           P + +  EILP+ S +  Q   K  A + +     Q+ FG      FD+VP
Sbjct: 21  PKVAVFSEILPLASKNRVQAGQKPRAASSSCTQELQALFGCLKKWEFDDVP 71


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,168,237
Number of Sequences: 27780
Number of extensions: 303486
Number of successful extensions: 756
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 742
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 756
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1279376318
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)