Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte19o01
(645 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_05_0009 - 20048736-20049423,20049504-20049743,20049832-20050385 58 8e-09
04_04_0784 - 28044883-28045654,28046626-28046859,28047328-28047875 55 6e-08
12_02_0980 - 25018107-25018469,25018792-25018938,25019028-25020110 30 1.4
07_03_1012 + 23295976-23296264,23296475-23296548,23296972-232969... 29 3.2
07_01_0467 - 3524598-3524837,3524939-3525466,3526242-3526892,352... 28 7.3
06_01_0900 + 6926600-6927202 28 7.3
07_01_0251 + 1874148-1874311,1874367-1874429,1874484-1874709,187... 27 9.7
06_03_0614 - 22753092-22753349,22754059-22754277,22754712-227549... 27 9.7
05_07_0208 + 28412736-28415348 27 9.7
>09_05_0009 - 20048736-20049423,20049504-20049743,20049832-20050385
Length = 493
Score = 57.6 bits (133), Expect = 8e-09
Identities = 34/90 (37%), Positives = 48/90 (53%), Gaps = 4/90 (4%)
Frame = +2
Query: 368 TYQEFAPAFKAEFFDPDKWADLFVKAGAKYVVLTSKHHEGFTLFPSKRSFSWNSVEVGPK 547
T +E AF+ D +W D AGA VVL +KHH+GF L+PS + + +SV P
Sbjct: 72 TGREPPAAFRPAALDASQWMDAAAAAGASLVVLVAKHHDGFCLWPS--AHTAHSVRASPW 129
Query: 548 R----DIVGDLAKAVRNTSLKFGVYHSLYE 625
R D+V + A A R L G+Y S ++
Sbjct: 130 RGGRGDVVREFADAARARGLDIGIYLSPWD 159
>04_04_0784 - 28044883-28045654,28046626-28046859,28047328-28047875
Length = 517
Score = 54.8 bits (126), Expect = 6e-08
Identities = 32/88 (36%), Positives = 46/88 (52%), Gaps = 4/88 (4%)
Frame = +2
Query: 392 FKAEFFDPDKWADLFVKAGAKYVVLTSKHHEGFTLFPSKRSFSWNSVEVGPKR----DIV 559
F D +WA G VVLT+KHH+GF L+PS + + SV P + D+V
Sbjct: 78 FAPSALDAGQWARAAAAGGFGRVVLTAKHHDGFCLWPS--ALTNYSVAASPWKGGAGDVV 135
Query: 560 GDLAKAVRNTSLKFGVYHSLYEWFNPIY 643
G+LA A R + G+Y S ++ P+Y
Sbjct: 136 GELAAAARAEGIGLGLYLSPWDRHEPVY 163
>12_02_0980 - 25018107-25018469,25018792-25018938,25019028-25020110
Length = 530
Score = 30.3 bits (65), Expect = 1.4
Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Frame = +1
Query: 256 LGRLFCARF-WIRMVLEQLERW*PTMHRFHDEKL-SSRIHLSG 378
+GR+FC R R LEQL RW +HR + + +HL G
Sbjct: 179 IGRVFCFRVETTRWSLEQLNRWCAALHRGRARVIVVANLHLPG 221
>07_03_1012 +
23295976-23296264,23296475-23296548,23296972-23296996,
23297486-23297568,23297653-23297685,23298322-23298469,
23298625-23298722
Length = 249
Score = 29.1 bits (62), Expect = 3.2
Identities = 14/51 (27%), Positives = 23/51 (45%)
Frame = +2
Query: 332 IDFMTKNYPPGFTYQEFAPAFKAEFFDPDKWADLFVKAGAKYVVLTSKHHE 484
+D + + + P T + A KA +PD + L G Y+ +KH E
Sbjct: 188 MDILREGWSPALTISKVLLAIKAIITNPDPYCPLVPSIGHLYLTDRTKHDE 238
>07_01_0467 -
3524598-3524837,3524939-3525466,3526242-3526892,
3527015-3527500,3527580-3527792,3527885-3528174,
3528276-3528418,3528633-3528855,3528983-3529160,
3529598-3529867
Length = 1073
Score = 27.9 bits (59), Expect = 7.3
Identities = 17/56 (30%), Positives = 26/56 (46%)
Frame = +2
Query: 434 FVKAGAKYVVLTSKHHEGFTLFPSKRSFSWNSVEVGPKRDIVGDLAKAVRNTSLKF 601
++K A V +K+H L F+W V P+R ++ K NT+LKF
Sbjct: 344 YLKGKAFKCVSAAKYHT-VALGTDGEVFTWGHRLVTPRRAVISRCLKKGGNTNLKF 398
>06_01_0900 + 6926600-6927202
Length = 200
Score = 27.9 bits (59), Expect = 7.3
Identities = 17/39 (43%), Positives = 21/39 (53%)
Frame = +1
Query: 505 KTFVQLEFRRSGPKTRYRRGPG*GGAKHKLEIRRLSFAL 621
KTF++ FRRS + G G GG KL LS+AL
Sbjct: 89 KTFIR-RFRRSPRHHHHGGGGGGGGGGRKLNYDPLSYAL 126
>07_01_0251 +
1874148-1874311,1874367-1874429,1874484-1874709,
1874830-1875081,1875158-1875267,1875720-1875815,
1875898-1875985,1876246-1876475,1876745-1876929,
1877136-1877335,1877592-1877924,1878058-1878159,
1878869-1879166,1879626-1879774,1879859-1880143,
1880531-1880728
Length = 992
Score = 27.5 bits (58), Expect = 9.7
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = +2
Query: 578 VRNTSLKFGVYHSLYEWFNPI 640
+RN L YH+LYEW+ +
Sbjct: 774 IRNNLLATSGYHTLYEWYRKV 794
>06_03_0614 -
22753092-22753349,22754059-22754277,22754712-22754960,
22755186-22755275,22755379-22755456,22755562-22756337,
22757042-22757384
Length = 670
Score = 27.5 bits (58), Expect = 9.7
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = +1
Query: 64 VLQNDEVIFLGILIRIRERRHT 129
+L N + IF+G+ IR +ER HT
Sbjct: 212 MLANGQKIFVGLFIRRQEREHT 233
>05_07_0208 + 28412736-28415348
Length = 870
Score = 27.5 bits (58), Expect = 9.7
Identities = 20/69 (28%), Positives = 33/69 (47%)
Frame = +2
Query: 398 AEFFDPDKWADLFVKAGAKYVVLTSKHHEGFTLFPSKRSFSWNSVEVGPKRDIVGDLAKA 577
+E + P+ DL+VK G TS F++ K SWN + G +GD+A +
Sbjct: 532 SEGYVPNALLDLYVKCGQ-----TSYAWAQFSVHSEKDVVSWNIMLSGFVAHGLGDIALS 586
Query: 578 VRNTSLKFG 604
+ N ++ G
Sbjct: 587 LFNQMVEMG 595
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,832,530
Number of Sequences: 37544
Number of extensions: 402879
Number of successful extensions: 937
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 910
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 935
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1596695220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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