Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte19n24
         (637 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1711.16 |||WD repeat protein Pwp1 |Schizosaccharomyces pombe...    29   0.43 
SPBC3H7.02 |||sulfate transporter |Schizosaccharomyces pombe|chr...    29   0.74 
SPCC1840.03 |sal3|pse1|karyopherin Sal3|Schizosaccharomyces pomb...    27   2.3  
SPAC4H3.11c |ppc89|mug127|spindle pole body protein Ppc89|Schizo...    26   5.2  
SPCC162.03 |||short chain dehydrogenase |Schizosaccharomyces pom...    25   9.1  

>SPBC1711.16 |||WD repeat protein Pwp1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 516

 Score = 29.5 bits (63), Expect = 0.43
 Identities = 14/46 (30%), Positives = 25/46 (54%)
 Frame = +1

Query: 430 FARVIDKKIHLDEYQYQTITELCKLKQENPALKVLISVGGAGEASG 567
           +A    K   +DE +Y+ I +L KLK E+    +  S+  + +A+G
Sbjct: 14  YASEFPKSYDIDEIEYERINQLSKLKLEDARADLQSSMEDSNKANG 59


>SPBC3H7.02 |||sulfate transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 877

 Score = 28.7 bits (61), Expect = 0.74
 Identities = 16/38 (42%), Positives = 23/38 (60%)
 Frame = +1

Query: 493 LCKLKQENPALKVLISVGGAGEASGFRDMVANHASRKI 606
           +CK ++ENP + +L +V      SGFRDM     SRK+
Sbjct: 352 VCKHRRENPPISILGTV-----PSGFRDMGVPVISRKL 384


>SPCC1840.03 |sal3|pse1|karyopherin Sal3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1095

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -1

Query: 286 PDFWNAADHYIPELA 242
           PD WN  DH++P LA
Sbjct: 901 PDSWNYKDHFLPYLA 915


>SPAC4H3.11c |ppc89|mug127|spindle pole body protein
           Ppc89|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 783

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 16/53 (30%), Positives = 22/53 (41%)
 Frame = -2

Query: 267 LTTIYQS*HRHVYSSSKDYEKARFRQNSIVI*THRYIRLVATNKL*ILFRCYQ 109
           L T+       +    K YEK   R NS+    H++ R    NKL  L  C +
Sbjct: 712 LKTVVNQLTNELMELKKRYEKLSDRYNSLTPGYHKHKRQEIKNKLIKLIECME 764


>SPCC162.03 |||short chain dehydrogenase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 292

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = +3

Query: 546 RCWRSFWF*RHGCQ 587
           R WR FW   HGC+
Sbjct: 204 RSWRPFWENYHGCE 217


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,666,301
Number of Sequences: 5004
Number of extensions: 56365
Number of successful extensions: 152
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 283719918
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)