Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte19n24
         (637 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0619 + 5412058-5413224,5413357-5413476,5413755-5413831,541...    28   5.4  
08_01_0348 - 3076395-3078236                                           28   5.4  

>08_01_0619 +
           5412058-5413224,5413357-5413476,5413755-5413831,
           5414201-5414321
          Length = 494

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = -1

Query: 277 WNAADHYIPELASTCIQQFQGL*KGSLS 194
           +N ADH++   AS  +  F+GL K +LS
Sbjct: 213 YNPADHHVHRYASNLLATFEGLYKEALS 240


>08_01_0348 - 3076395-3078236
          Length = 613

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = +1

Query: 301 IPVTSDIKSNTVVSCYYNTPDNDGKQLLPASI 396
           IP    +  NT++SC++ + D DG + L AS+
Sbjct: 75  IPTPDAVSYNTLLSCHFASGDADGARRLFASM 106


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,142,736
Number of Sequences: 37544
Number of extensions: 326917
Number of successful extensions: 771
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 759
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 771
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1561213104
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)